From 205035c0efe4095ee9f91a43d35aa354f8e9fd8e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Petr=20Kr=C3=A1l?= <petr@inuits.eu>
Date: Mon, 4 Nov 2024 12:08:57 +0100
Subject: [PATCH] progress on #449 mosdepth

---
 449_mosdepth/Nim-2.2.0-GCCcore-11.2.0.eb  | 17 ++++++++
 449_mosdepth/mosdepth-0.3.9-GCC-12.3.0.eb | 48 +++++++++++++++++++++++
 2 files changed, 65 insertions(+)
 create mode 100644 449_mosdepth/Nim-2.2.0-GCCcore-11.2.0.eb
 create mode 100644 449_mosdepth/mosdepth-0.3.9-GCC-12.3.0.eb

diff --git a/449_mosdepth/Nim-2.2.0-GCCcore-11.2.0.eb b/449_mosdepth/Nim-2.2.0-GCCcore-11.2.0.eb
new file mode 100644
index 00000000..2214b1c9
--- /dev/null
+++ b/449_mosdepth/Nim-2.2.0-GCCcore-11.2.0.eb
@@ -0,0 +1,17 @@
+name = 'Nim'
+version = '2.2.0'
+
+homepage = 'https://nim-lang.org/'
+description = "Nim is a systems and applications programming language."
+
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+
+source_urls = ['https://nim-lang.org/download/']
+sources = [SOURCELOWER_TAR_XZ]
+checksums = ['ce9842849c9760e487ecdd1cdadf7c0f2844cafae605401c7c72ae257644893c']
+
+builddependencies = [('binutils', '2.40')]
+
+dependencies = [('libreadline', '8.2')]
+
+moduleclass = 'lang'
diff --git a/449_mosdepth/mosdepth-0.3.9-GCC-12.3.0.eb b/449_mosdepth/mosdepth-0.3.9-GCC-12.3.0.eb
new file mode 100644
index 00000000..8fcad4de
--- /dev/null
+++ b/449_mosdepth/mosdepth-0.3.9-GCC-12.3.0.eb
@@ -0,0 +1,48 @@
+easyblock = 'Binary'
+
+name = 'mosdepth'
+version = '0.3.9'
+local_hts_nim_ver = '0.3.25'
+
+homepage = 'https://github.com/brentp/mosdepth'
+description = "Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing"
+
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
+
+sources = [
+    {
+        'source_urls': ['https://github.com/brentp/hts-nim/archive/'],
+        'download_filename': 'v%s.tar.gz' % local_hts_nim_ver,
+        'filename': 'hts-nim-%s.tar.gz' % local_hts_nim_ver,
+    },
+    {
+        'source_urls': ['https://github.com/brentp/mosdepth/archive/'],
+        'download_filename': 'v%(version)s.tar.gz',
+        'filename': SOURCE_TAR_GZ,
+    },
+]
+checksums = [
+    {'hts-nim-0.3.25.tar.gz': 'b13b9bb5aa567a69bf17547aadbbd39e37beb4f71a28f267b83dfea9ea4d05e8'},
+    {'mosdepth-0.3.9.tar.gz': '9171ea9a6ddaccd0091db5b85fa9e6cb79516bbe005c47ffc8dcfe49c978eb69'},
+]
+
+dependencies = [
+    ('Nim', '2.2.0'),
+    ('HTSlib', '1.18'),
+    ('PCRE', '8.45'),
+]
+
+extract_sources = True
+
+install_cmd = "cd %(builddir)s/hts-nim-*/ && nimble install --nimbleDir:%(installdir)s --verbose -y && "
+install_cmd += "cd ../mosdepth-*/ && "
+install_cmd += "nimble install --nimbleDir:%(installdir)s --verbose -y"
+
+sanity_check_paths = {
+    'files': ['bin/mosdepth'],
+    'dirs': [],
+}
+
+sanity_check_commands = ["mosdepth --help"]
+
+moduleclass = 'bio'