main.tex

\documentclass[a4paper,12pt]{report}

% The following makes latex use nicer postscript fonts.
\usepackage{times}
\usepackage[english]{babel}
\usepackage[utf8]{inputenc}
\usepackage{csquotes}% Recommended
\usepackage{attrib}% Attribute quotes
\usepackage{amsmath,amsfonts,amssymb}
\usepackage{graphicx}
\usepackage[linkbordercolor={0.7 0.2 0.25},citebordercolor={0 0.2 .8}]{hyperref}
\usepackage[backend=biber, style=apa, uniquelist=false, maxcitenames=1,
  doi=false,
  url=false,
  isbn=false
]{biblatex}
\DeclareLanguageMapping{english}{english-apa}
\usepackage[section]{placeins} % To keep floats within their sections
\usepackage{vubtitlepage}
\usepackage[Rejne]{fncychap}
\usepackage{subcaption}
\usepackage{epigraph} % Citation start of chapter
\usepackage{algorithm,algpseudocode}
\usepackage[toc,page]{appendix}
\usepackage{tabularx}
\usepackage{siunitx}
% \usepackage{refcheck}

%\usepackage{layouts}
\graphicspath{ {images/} }
%\addbibresource{bib/Mendeley.bib}
\addbibresource{bib/Thesis.bib}
\addbibresource{other.bib}

\input{custom.tex}

\begin{document}
\renewcommand{\arraystretch}{1.3}

\hfuzz=100pt
\input{titlepage.tex}
\hfuzz=0pt

\pagenumbering{roman}
\include{pre}
\tableofcontents
\listoffigures
\listoftables
\listofalgorithms

% Actual content

\include{introduction}
\include{ml}
\include{ann}
\include{rl}
\include{dl}
\include{exp}
\include{conclusions}

\begin{appendices}
\include{appendix}
\include{extra}
\end{appendices}

\printbibliography
\end{document}