DESCRIPTION

Package: cBioPortalData
Title: Exposes and Makes Available Data from the cBioPortal Web Resources
Version: 2.19.9
Authors@R: c(
    person("Levi", "Waldron", , "lwaldron.research@gmail.com", "aut"),
    person("Marcel", "Ramos", , "marcel.ramos@sph.cuny.edu",
      c("aut", "cre"), c(ORCID = "0000-0002-3242-0582")
    ),
    person("Karim", "Mezhoud", , "kmezhoud@gmail.com", "ctb")
  )
Description: The cBioPortalData R package accesses study datasets from the
    cBio Cancer Genomics Portal. It accesses the data either from
    the pre-packaged zip / tar files or from the API interface that was
    recently implemented by the cBioPortal Data Team. The package can provide
    data in either tabular format or with MultiAssayExperiment object that uses
    familiar Bioconductor data representations.
Depends: R (>= 4.5.0),
    AnVIL (>= 1.19.5),
    MultiAssayExperiment
Imports:
    BiocBaseUtils,
    BiocFileCache (>= 1.5.3),
    digest,
    dplyr,
    GenomeInfoDb,
    GenomicRanges,
    httr,
    IRanges,
    methods,
    readr,
    RaggedExperiment,
    RTCGAToolbox (>= 2.19.7),
    S4Vectors,
    SummarizedExperiment,
    stats,
    tibble,
    tidyr,
    TCGAutils (>= 1.9.4),
    utils
Suggests:
    BiocStyle,
    jsonlite,
    knitr,
    survival,
    survminer,
    rmarkdown,
    testthat
Date: 2025-01-14
License: AGPL-3
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://github.com/waldronlab/cBioPortalData
BugReports: https://github.com/waldronlab/cBioPortalData/issues
biocViews: Software, Infrastructure, ThirdPartyClient
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Collate: 
    'utils.R'
    'cBioDataPack.R'
    'cBioPortal-class.R'
    'cBioPortal.R'
    'cBioPortalData-pkg.R'
    'cBioPortalData.R'
    'cache.R'