diff --git a/articles/smaller_example_files/figure-html/unnamed-chunk-5-1.png b/articles/smaller_example_files/figure-html/unnamed-chunk-5-1.png index bbde192..d594829 100644 Binary files a/articles/smaller_example_files/figure-html/unnamed-chunk-5-1.png and b/articles/smaller_example_files/figure-html/unnamed-chunk-5-1.png differ diff --git a/articles/taxPPro.html b/articles/taxPPro.html index d2ce137..e34fde8 100644 --- a/articles/taxPPro.html +++ b/articles/taxPPro.html @@ -147,9 +147,12 @@

Session information#> data.tree * 1.1.0 2023-11-12 [1] RSPM (R 4.3.0) #> desc 1.4.3 2023-12-10 [1] RSPM (R 4.3.0) #> digest 0.6.33 2023-07-07 [1] RSPM (R 4.3.0) +#> dplyr 1.1.4 2023-11-17 [1] RSPM (R 4.3.0) #> evaluate 0.23 2023-11-01 [1] RSPM (R 4.3.0) +#> fansi 1.0.6 2023-12-08 [1] RSPM (R 4.3.0) #> fastmap 1.1.1 2023-02-24 [1] RSPM (R 4.3.0) #> fs 1.6.3 2023-07-20 [1] RSPM (R 4.3.0) +#> generics 0.1.3 2022-07-05 [1] RSPM (R 4.3.0) #> glue 1.6.2 2022-02-24 [1] RSPM (R 4.3.0) #> htmltools 0.5.7 2023-11-03 [1] RSPM (R 4.3.0) #> jquerylib 0.1.4 2021-04-26 [1] RSPM (R 4.3.0) @@ -160,6 +163,8 @@

Session information#> magrittr 2.0.3 2022-03-30 [1] RSPM (R 4.3.0) #> memoise 2.0.1 2021-11-26 [1] RSPM (R 4.3.0) #> nlme 3.1-163 2023-08-09 [2] CRAN (R 4.3.2) +#> pillar 1.9.0 2023-03-22 [1] RSPM (R 4.3.0) +#> pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.3.0) #> pkgdown 2.0.7 2022-12-14 [1] RSPM (R 4.3.0) #> purrr 1.0.2 2023-08-10 [1] RSPM (R 4.3.0) #> R6 2.5.1 2021-08-19 [1] RSPM (R 4.3.0) @@ -174,6 +179,9 @@

Session information#> systemfonts 1.0.5 2023-10-09 [1] RSPM (R 4.3.0) #> taxPPro * 0.1.0 2023-12-28 [1] local #> textshaping 0.3.7 2023-10-09 [1] RSPM (R 4.3.0) +#> tibble 3.2.1 2023-03-20 [1] RSPM (R 4.3.0) +#> tidyselect 1.2.0 2022-10-10 [1] RSPM (R 4.3.0) +#> utf8 1.2.4 2023-10-22 [1] RSPM (R 4.3.0) #> vctrs 0.6.5 2023-12-01 [1] RSPM (R 4.3.0) #> xfun 0.41 2023-11-01 [1] RSPM (R 4.3.0) #> yaml 2.3.8 2023-12-11 [1] RSPM (R 4.3.0) diff --git a/pkgdown.yml b/pkgdown.yml index bc89962..8745ef3 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -8,7 +8,7 @@ articles: uncertainty_binary: uncertainty_binary.html uncertainty_multistate: uncertainty_multistate.html taxPPro: taxPPro.html -last_built: 2023-12-28T23:44Z +last_built: 2023-12-28T23:50Z urls: reference: https://waldronlab.io/taxPPro/reference article: https://waldronlab.io/taxPPro/articles diff --git a/reference/ltp.html b/reference/ltp.html index b992430..310ee36 100644 --- a/reference/ltp.html +++ b/reference/ltp.html @@ -77,9 +77,16 @@

Get living tree project (LTP) tree and data

- 
ltp()
+ 
ltp(remove_gn_nodes = TRUE)
+
+

Arguments

+
remove_gn_nodes
+

Remove rows from node_data with genus taxids. +Default is TRUE, which removes them. These are already in tip_data.

+ +

Value