Time-lapse saved from Fiji are not compatible

[romainGuiet]

Dear @bentaculum ,

I tried to save time-lapse as a single tif file from Fiji and got the error below , when starting the training :

train.py: Run name `h2b_backbone_unet`
set_device.py: PyTorch uses GPUs 0.
train.py: Build visualisation datasets.
tarrow_dataset.py: Load images 0-1
Traceback (most recent call last):
  File "train.py", line 453, in <module>
    main(args)
  File "train.py", line 344, in main
    data_visuals = tuple(
  File "train.py", line 345, in <genexpr>
    _build_dataset(
  File "train.py", line 224, in _build_dataset
    return TarrowDataset(
  File "C:\Users\guiet\AppData\Local\mambaforge\envs\tarrow_4\lib\site-packages\tarrow\data\tarrow_dataset.py", line 166, in __init__
    raise NotImplementedError(
NotImplementedError: only 2D timelapses supported (total image shape: torch.Size([1, 1, 240, 540, 540]))

Current workaround is to save the time-lapse from Fiji using: File> Save As > Image Sequence

Best

R