Small script/lib for calculating GC content
$ python3 guci.py
$ # pyfastx
$ # polars
$ # matplotlib
$ pip install -r requirements.txt
usage: guci.py [-h] -f FASTA -w WINDOW [-o OUT_FOLDER] [-p {png,pdf}]
Plot GC content of genomes.
options:
-h, --help show this help message and exit
-f FASTA, --fasta FASTA
Fasta file
-w WINDOW, --window WINDOW
Size of sliding window
-o OUT_FOLDER, --out_folder OUT_FOLDER
Output folder
-p {png,pdf}, --plot_type {png,pdf}
How to save the plots
- Please give the repo a star!
- PR´s are welcome!