From c1a5bc6df0e3e60c5b2cb2f9a813372907796664 Mon Sep 17 00:00:00 2001 From: wincowgerDEV Date: Sun, 23 Jun 2024 21:18:56 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20wincowge?= =?UTF-8?q?rDEV/OpenSpecy-package@ecdfbc7d8534a7f32d049b0aa60eba61a812e2ec?= =?UTF-8?q?=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- articles/advanced.html | 2 +- articles/app.html | 2 +- articles/sop.html | 14 +++++++------- articles/spectragryph.html | 2 +- news/index.html | 2 +- pkgdown.yml | 2 +- reference/def_features.html | 4 ++-- reference/human_ts.html | 2 +- reference/interactive_plots.html | 15 ++++++++++----- reference/io_spec.html | 2 +- reference/read_ext.html | 12 ++++++------ reference/read_multi.html | 30 +++++++++++++++--------------- reference/read_opus.html | 2 +- search.json | 2 +- 14 files changed, 49 insertions(+), 44 deletions(-) diff --git a/articles/advanced.html b/articles/advanced.html index 69c61268..19bb93bb 100644 --- a/articles/advanced.html +++ b/articles/advanced.html @@ -81,7 +81,7 @@

Chelsea Rochman, Sebastian Primpke, Jennifer Lynch, Hannah Hapich, Hannah De Frond, Keenan Munno, Bridget O’Donnell

-

2024-06-13

+

2024-06-23

Source: vignettes/advanced.Rmd
advanced.Rmd
diff --git a/articles/app.html b/articles/app.html index 3aa9faf8..6c582a9b 100644 --- a/articles/app.html +++ b/articles/app.html @@ -79,7 +79,7 @@

Win Cowger, Zacharias Steinmetz

-

2024-06-13

+

2024-06-23

Source: vignettes/app.Rmd
app.Rmd
diff --git a/articles/sop.html b/articles/sop.html index dbbb0a77..9ff541e1 100644 --- a/articles/sop.html +++ b/articles/sop.html @@ -81,7 +81,7 @@

Win Cowger, Zacharias Steinmetz, Rachel Kozloski, Aleksandra Karapetrova

-

2024-06-13

+

2024-06-23

Source: vignettes/sop.Rmd
sop.Rmd
@@ -333,7 +333,7 @@

Spectra# changing your underlying data plotly_spec(scratch_OpenSpecy, json_example)
- +

Maps @@ -359,7 +359,7 @@

Maps 
 interactive_plot(spectral_map, select = 100, z = spectral_map$metadata$x)
-


+


@@ -420,7 +420,7 @@

Filtering OpenSpecy Objects#> 1: 0.000025000, 0.000025000 9_5 #> session_id #> <char> -#> 1: e6cba825c1c3b12ae7b40742c4b13073/d920ff1d6f3fd644e955868de971388e +#> 1: 0f7e0d6bd8843ef71264e330de4c7889/571ffa6ac88b25bd650c3ec4b6e3d978 #> file_id #> <char> #> 1: 215a0fd7e0dc3b1001799214618ce6eb

@@ -457,7 +457,7 @@

Filtering OpenSpecy Objects#> 1: 0.000025000, 0.000025000 8_5 #> session_id #> <char> -#> 1: e6cba825c1c3b12ae7b40742c4b13073/d920ff1d6f3fd644e955868de971388e +#> 1: 0f7e0d6bd8843ef71264e330de4c7889/571ffa6ac88b25bd650c3ec4b6e3d978 #> file_id #> <char> #> 1: 215a0fd7e0dc3b1001799214618ce6eb @@ -600,7 +600,7 @@

Threshold Signal-Noise heatmap_spec(spectral_map_p, sn = spectral_map_p$metadata$sig_noise, min_sn = 5)
- +

Intensity Adjustment @@ -621,7 +621,7 @@

Intensity Adjustmentplotly_spec(trans_raman_hdpe, rev_trans_raman_hdpe)

- +

Conforming diff --git a/articles/spectragryph.html b/articles/spectragryph.html index 14f4366f..c5c834d5 100644 --- a/articles/spectragryph.html +++ b/articles/spectragryph.html @@ -81,7 +81,7 @@

Chelsea Rochman, Sebastian Primpke, Jennifer Lynch, Hannah Hapich, Hannah De Frond, Keenan Munno, Bridget O’Donnell

-

2024-06-13

+

2024-06-23

Source: vignettes/spectragryph.Rmd
spectragryph.Rmd
diff --git a/news/index.html b/news/index.html index e223b83a..a2ec6348 100644 --- a/news/index.html +++ b/news/index.html @@ -54,7 +54,7 @@
-

OpenSpecy 1.1.0

+

OpenSpecy 1.1.0

CRAN release: 2024-06-13

Minor Improvements

  • updated links
    • diff --git a/pkgdown.yml b/pkgdown.yml index 8738369e..72a54a82 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -6,7 +6,7 @@ articles: app: app.html sop: sop.html spectragryph: spectragryph.html -last_built: 2024-06-13T22:36Z +last_built: 2024-06-23T21:18Z urls: reference: http://wincowger.com/OpenSpecy-package/reference article: http://wincowger.com/OpenSpecy-package/articles diff --git a/reference/def_features.html b/reference/def_features.html index 9493500e..b097690e 100644 --- a/reference/def_features.html +++ b/reference/def_features.html @@ -264,8 +264,8 @@

    Examples#> 2: 0.000025000, 0.000025000 0_1 #> session_id #> <char> -#> 1: e6cba825c1c3b12ae7b40742c4b13073/c74ba402d33e840f348e5adfabf1e130 -#> 2: e6cba825c1c3b12ae7b40742c4b13073/c74ba402d33e840f348e5adfabf1e130 +#> 1: 0f7e0d6bd8843ef71264e330de4c7889/8a714b5c6621cc53fc4c3087d033ef71 +#> 2: 0f7e0d6bd8843ef71264e330de4c7889/8a714b5c6621cc53fc4c3087d033ef71 #> file_id centroid_x centroid_y first_x first_y #> <char> <num> <num> <num> <num> #> 1: 215a0fd7e0dc3b1001799214618ce6eb 0 6 0 0 diff --git a/reference/human_ts.html b/reference/human_ts.html index 4a3ca245..50bd21eb 100644 --- a/reference/human_ts.html +++ b/reference/human_ts.html @@ -90,7 +90,7 @@

    Author<

    Examples

    human_ts()
-#> [1] "20240613-223615"
+#> [1] "20240623-211826"
    diff --git a/reference/interactive_plots.html b/reference/interactive_plots.html index d8e10660..a65dfe55 100644 --- a/reference/interactive_plots.html +++ b/reference/interactive_plots.html @@ -100,6 +100,7 @@

    Usage paper_bgcolor = "rgb(0, 0, 0)", colorscale = "Viridis", showlegend = FALSE, + type = "interactive", ... ) @@ -157,8 +158,7 @@

    Argumentsplot_ly().

    +

    whether to show the legend passed to

    z
    @@ -204,6 +204,11 @@

    Arguments.

    +
    type
    +

    specification for plot type either interactive or static +plot_ly().

    + +
    ...

    further arguments passed to plot_ly().

    @@ -228,14 +233,14 @@

    Examplestiny_map <- read_extdata("CA_tiny_map.zip") |> read_zip() plotly_spec(raman_hdpe)
    - + heatmap_spec(tiny_map, z = tiny_map$metadata$y, showlegend = TRUE)
    - + sample_spec(tiny_map, size = 12) |> interactive_plot(select = 2, x2 = raman_hdpe)
    - +