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Hi,
I have successfully run psupertime on multiple datasets, but I met a weird error for a new dataset:
cross-validation training, 5 folds:
fold 1
Error in lognet(xd, is.sparse, ix, jx, y, weights, offset, alpha, nobs, :
long vectors (argument 5) are not supported in .Fortran
Calls: psupertime ... .train_on_folds -> .glmnetcr_propn -> glmnet -> lognet
In addition: Warning messages:
1: In if (!(class(x) %in% c("SingleCellExperiment", "matrix", "dgCMatrix", :
the condition has length > 1 and only the first element will be used
2: In if (class(x) == "SingleCellExperiment") { :
the condition has length > 1 and only the first element will be used
3: In .check_x(x, y, assay_type) :
x has no colnames; giving arbitrary colnames
4: In if (class(x) == "SingleCellExperiment") { :
the condition has length > 1 and only the first element will be used
5: In if (class(x) %in% c("matrix", "dgCMatrix", "dgCMatrix")) { :
the condition has length > 1 and only the first element will be used
6: In if (class(x) == "SingleCellExperiment") { :
the condition has length > 1 and only the first element will be used
7: In if (class(x) %in% c("matrix", "dgCMatrix", "dgRMatrix", "dgTMatrix")) { :
the condition has length > 1 and only the first element will be used
Execution halted
My code: psuper_sci_rna = psupertime(sci_rna_log, time_order, sel_genes='all')
I did a quick search. Is it relates to the # of cells in the data? Can psupertime scale to 10k,100k, or 1 million cells?
Best,
Gang
The text was updated successfully, but these errors were encountered:
Hi,
I have successfully run psupertime on multiple datasets, but I met a weird error for a new dataset:
My code:
psuper_sci_rna = psupertime(sci_rna_log, time_order, sel_genes='all')
I did a quick search. Is it relates to the # of cells in the data? Can psupertime scale to 10k,100k, or 1 million cells?
Best,
Gang
The text was updated successfully, but these errors were encountered: