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./real.exe: error while loading shared libraries: libifport.so.5: cannot open shared object file: No such file or directory #56

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setarehrahimi opened this issue Jul 24, 2023 · 0 comments

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@setarehrahimi
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I am trying to install WRF-Chem version 4.2.1 using an Intel compiler on a HPC . I installed mpich, netcdf-c, netcdf-fortran, zlib and jasper to do so. However after compiling WRF-Chem, I tried to run real.exe and faced below error:
./real.exe: error while loading shared libraries: libifport.so.5: cannot open shared object file: No such file or directory

I insert "ldd real.exe" command , and here is the result :
ldd real.exe
linux-vdso.so.1 => (0x00007fffc5acf000)
libnetcdff.so.7 => /backup3/seti/setii/WRF-CHEM/LIBRARIES/netcdf/lib/libnetcdff.so.7 (0x00002b5db2dc8000)
libmpifort.so.12 => /backup3/seti/setii/WRF-CHEM/LIBRARIES/mpich/lib/libmpifort.so.12 (0x00002b5db3415000)
libmpi.so.12 => /backup3/seti/setii/WRF-CHEM/LIBRARIES/mpich/lib/libmpi.so.12 (0x00002b5db3716000)
libm.so.6 => /lib64/libm.so.6 (0x0000003943600000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003943e00000)
libc.so.6 => /lib64/libc.so.6 (0x0000003943200000)
libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000003946e00000)
libdl.so.2 => /lib64/libdl.so.2 (0x0000003943a00000)
libifport.so.5 => not found
libifcoremt.so.5 => not found
libimf.so => not found
libsvml.so => not found
libintlc.so.5 => not found
librt.so.1 => /lib64/librt.so.1 (0x0000003944600000)
/lib64/ld-linux-x86-64.so.2 (0x00002b5db2ba5000)
libifport.so.5 => not found
libifcoremt.so.5 => not found
libimf.so => not found
libintlc.so.5 => not found
libsvml.so => not found
libimf.so => not found
libsvml.so => not found
libirng.so => not found
libintlc.so.5 => not found

module list
Currently Loaded Modulefiles:

  1. mathematica11 2) intel-mpi-5 3) intel-ics-2015

conda list

packages in environment at /opt/intel/intelpython3:

asn1crypto 0.24.0 py36_3 file:///opt/intel/conda_channel
bzip2 1.0.6 17 intel
certifi 2018.1.18 py36_2 file:///opt/intel/conda_channel
cffi 1.11.5 py36_3 file:///opt/intel/conda_channel
chardet 3.0.4 py36_3 file:///opt/intel/conda_channel
conda 4.3.31 py36_3 file:///opt/intel/conda_channel
conda-env 2.6.0 0 intel
cryptography 2.3 py36_1 file:///opt/intel/conda_channel
cycler 0.10.0 py36_7 intel
cython 0.29.6 py36h7b7c402_0 intel
daal 2019.4 intel_243 file:///opt/intel/conda_channel
daal4py 2019.4 py36h7b7c402_0 intel
freetype 2.9 3 intel
funcsigs 1.0.2 py36_7 intel
icc_rt 2019.4 intel_243 file:///opt/intel/conda_channel
idna 2.6 py36_3 file:///opt/intel/conda_channel
impi_rt 2019.4 intel_243 file:///opt/intel/conda_channel
intel-openmp 2019.4 intel_243 file:///opt/intel/conda_channel
intelpython 2019.4 0 intel
ipp 2019.4 intel_243 file:///opt/intel/conda_channel
kiwisolver 1.0.1 py36_2 intel
libffi 3.2.1 11 intel
libpng 1.6.36 2 intel
llvmlite 0.27.1 py36_0 intel
matplotlib 3.0.3 py36_4 intel
mkl 2019.4 intel_243 file:///opt/intel/conda_channel
mkl-service 1.0.0 py36h7b7c402_11 intel
mkl_fft 1.0.11 py36h7b7c402_2 intel
mkl_random 1.0.2 py36h7b7c402_4 intel
mpi4py 3.0.0 py36_3 intel
numba 0.42.1 np116py36_2 intel
numexpr 2.6.8 py36_2 intel
numpy 1.16.2 py36h7b7c402_0 intel
numpy-base 1.16.2 py36_0 intel
openssl 1.0.2r 2 file:///opt/intel/conda_channel
pandas 0.24.1 py36_3 intel
pip 10.0.1 py36_0 file:///opt/intel/conda_channel
pycosat 0.6.3 py36_3 file:///opt/intel/conda_channel
pycparser 2.18 py36_2 file:///opt/intel/conda_channel
pyeditline 2.0.0 py36_0 intel
pyopenssl 17.5.0 py36_2 file:///opt/intel/conda_channel
pyparsing 2.2.0 py36_2 intel
pysocks 1.6.7 py36_1 file:///opt/intel/conda_channel
python 3.6.8 7 file:///opt/intel/conda_channel
python-dateutil 2.6.0 py36_12 intel
pytz 2018.4 py36_3 intel
pyyaml 4.1 py36_3 intel
requests 2.20.1 py36_1 file:///opt/intel/conda_channel
ruamel_yaml 0.11.14 py36_4 file:///opt/intel/conda_channel
scikit-learn 0.20.3 py36h7b7c402_5 intel
scipy 1.2.1 py36h7b7c402_3 intel
setuptools 39.0.1 py36_0 file:///opt/intel/conda_channel
six 1.11.0 py36_3 file:///opt/intel/conda_channel
smp 0.1.4 py36_0 intel
sqlite 3.27.2 4 intel
tbb 2019.6 intel_243 file:///opt/intel/conda_channel
tbb4py 2019.6 py36_intel_0 file:///opt/intel/conda_channel
tcl 8.6.4 24 intel
tk 8.6.4 29 intel
urllib3 1.24.1 py36_2 file:///opt/intel/conda_channel
wheel 0.31.0 py36_3 file:///opt/intel/conda_channel
wrf-python 1.3.2 py38h7eb8c7e_1 https://
xgboost 0.81 py36_0 intel
xz 5.2.3 2 intel
yaml 0.1.7 2 intel
zlib 1.2.11 5 intel

I also noticed a discussion related to my similar problem ( #14 ), but I could not follow it because I am new in this field (I do not know what is pre.bash and config.bash) . So may I ask you please to kindly help me to sort this issue out. I have been struggling with the issue for 3 months, and did no progress to do my dissertation. Please help me.

any suggestion appreciated,
Best wishes,

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