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E.g.
$ jq -n '{coll: "/testZone/home/irods", obj: "15440_1#0.bam"}' | baton-get --raw | samtools view | tail [E::bgzf_read_block] Invalid BGZF header at offset 97296 [E::bgzf_read] Read block operation failed with error 2 after 0 of 4 bytes samtools view: error reading file "-" samtools view: error closing "-": -1 read.9000 16 test_ref9 892 40 100M * 0 0 TAACAAGTACCAACGCTTTCGCCCTGTTTCAAGACGACTAGTAGGATAACCCAGTACTTCTCGTAGCTGGCGGACATGTCTGTGTTCGTTTGGTTTGACT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII read.9001 16 test_ref9 893 40 100M * 0 0 AACAAGTACCAACGCTTTCGCCCTGTTTCAAGACGACTAGTAGGATAACCCAGTACTTCTCGTAGCTGGCGGACATGTCTGTGTTCGTTTGGTTTGACTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII read.9002 16 test_ref9 894 40 100M * 0 0 ACAAGTACCAACGCTTTCGCCCTGTTTCAAGACGACTAGTAGGATAACCCAGTACTTCTCGTAGCTGGCGGACATGTCTGTGTTCGTTTGGTTTGACTAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII read.9003 16 test_ref9 895 40 100M * 0 0 CAAGTACCAACGCTTTCGCCCTGTTTCAAGACGACTAGTAGGATAACCCAGTACTTCTCGTAGCTGGCGGACATGTCTGTGTTCGTTTGGTTTGACTACT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII read.9004 16 test_ref9 896 40 100M * 0 0 AAGTACCAACGCTTTCGCCCTGTTTCAAGACGACTAGTAGGATAACCCAGTACTTCTCGTAGCTGGCGGACATGTCTGTGTTCGTTTGGTTTGACTACTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII read.9005 16 test_ref9 897 40 100M * 0 0 AGTACCAACGCTTTCGCCCTGTTTCAAGACGACTAGTAGGATAACCCAGTACTTCTCGTAGCTGGCGGACATGTCTGTGTTCGTTTGGTTTGACTACTAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII read.9006 16 test_ref9 898 40 100M * 0 0 GTACCAACGCTTTCGCCCTGTTTCAAGACGACTAGTAGGATAACCCAGTACTTCTCGTAGCTGGCGGACATGTCTGTGTTCGTTTGGTTTGACTACTACG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII read.9007 16 test_ref9 899 40 100M * 0 0 TACCAACGCTTTCGCCCTGTTTCAAGACGACTAGTAGGATAACCCAGTACTTCTCGTAGCTGGCGGACATGTCTGTGTTCGTTTGGTTTGACTACTACGT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII read.9008 16 test_ref9 900 40 100M * 0 0 ACCAACGCTTTCGCCCTGTTTCAAGACGACTAGTAGGATAACCCAGTACTTCTCGTAGCTGGCGGACATGTCTGTGTTCGTTTGGTTTGACTACTACGTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII read.9009 16 test_ref9 901 40 100M * 0 0 CCAACGCTTTCGCCCTGTTTCAAGACGACTAGTAGGATAACCCAGTACTTCTCGTAGCTGGCGGACATGTCTGTGTTCGTTTGGTTTGACTACTACGTCC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
Yet tears (using the same iRODS API calls) does not. It's also triggered by e.g. tee
tears
tee
The text was updated successfully, but these errors were encountered:
No branches or pull requests
E.g.
Yet
tears
(using the same iRODS API calls) does not. It's also triggered by e.g.tee
The text was updated successfully, but these errors were encountered: