From 033605470fdc9d0edf21592eae9c9ca56aabe536 Mon Sep 17 00:00:00 2001 From: dsvt Date: Tue, 26 Mar 2024 11:56:30 +0000 Subject: [PATCH] Setup repo --- .github/DISCUSSION_TEMPLATE/general.yaml | 35 -- .github/DISCUSSION_TEMPLATE/q-a.yaml | 35 -- .github/ISSUE_TEMPLATE/config.yml | 8 - .github/ISSUE_TEMPLATE/issue.yaml | 38 -- .github/pull_request_template.md | 15 +- .github/user_pull_request_template.md | 4 - .github/workflows/versioning.yaml | 135 ------- CHANGELOG.md | 146 -------- README.md | 29 +- _config.yaml | 14 +- index.md | 17 +- testbed.md | 437 ----------------------- 12 files changed, 15 insertions(+), 898 deletions(-) delete mode 100644 .github/DISCUSSION_TEMPLATE/general.yaml delete mode 100644 .github/DISCUSSION_TEMPLATE/q-a.yaml delete mode 100644 .github/ISSUE_TEMPLATE/config.yml delete mode 100644 .github/ISSUE_TEMPLATE/issue.yaml delete mode 100644 .github/user_pull_request_template.md delete mode 100644 .github/workflows/versioning.yaml delete mode 100644 CHANGELOG.md delete mode 100644 testbed.md diff --git a/.github/DISCUSSION_TEMPLATE/general.yaml b/.github/DISCUSSION_TEMPLATE/general.yaml deleted file mode 100644 index 66b2c49..0000000 --- a/.github/DISCUSSION_TEMPLATE/general.yaml +++ /dev/null @@ -1,35 +0,0 @@ -body: - - type: checkboxes - attributes: - label: Checks - options: - - label: I have searched **[the docs](https://greene-lab.gitbook.io/lab-website-template-docs)**, [existing issues](https://github.com/greenelab/lab-website-template/issues), and [existing discussions](https://github.com/greenelab/lab-website-template/discussions) for answers first. - required: true - - - type: input - id: repo - attributes: - label: Link to your website repo - description: "In almost all cases, **we cannot help you if you don't provide this**." - placeholder: ex. https://github.com/greenelab/greenelab.com - validations: - required: true - - - type: input - id: version - attributes: - label: Version of Lab Website Template you are using - description: See your `CITATION.cff` file. - placeholder: ex. 1.0.0 - validations: - required: true - - - type: textarea - id: description - attributes: - label: Description - description: | - Describe your issue in as much detail as possible. For example: What happened? What did you expect to happen? How can we reproduce the problem? What browser are you seeing the problem in? - placeholder: Description - validations: - required: true diff --git a/.github/DISCUSSION_TEMPLATE/q-a.yaml b/.github/DISCUSSION_TEMPLATE/q-a.yaml deleted file mode 100644 index 66b2c49..0000000 --- a/.github/DISCUSSION_TEMPLATE/q-a.yaml +++ /dev/null @@ -1,35 +0,0 @@ -body: - - type: checkboxes - attributes: - label: Checks - options: - - label: I have searched **[the docs](https://greene-lab.gitbook.io/lab-website-template-docs)**, [existing issues](https://github.com/greenelab/lab-website-template/issues), and [existing discussions](https://github.com/greenelab/lab-website-template/discussions) for answers first. - required: true - - - type: input - id: repo - attributes: - label: Link to your website repo - description: "In almost all cases, **we cannot help you if you don't provide this**." - placeholder: ex. https://github.com/greenelab/greenelab.com - validations: - required: true - - - type: input - id: version - attributes: - label: Version of Lab Website Template you are using - description: See your `CITATION.cff` file. - placeholder: ex. 1.0.0 - validations: - required: true - - - type: textarea - id: description - attributes: - label: Description - description: | - Describe your issue in as much detail as possible. For example: What happened? What did you expect to happen? How can we reproduce the problem? What browser are you seeing the problem in? - placeholder: Description - validations: - required: true diff --git a/.github/ISSUE_TEMPLATE/config.yml b/.github/ISSUE_TEMPLATE/config.yml deleted file mode 100644 index 7d0b7de..0000000 --- a/.github/ISSUE_TEMPLATE/config.yml +++ /dev/null @@ -1,8 +0,0 @@ -blank_issues_enabled: true -contact_links: - - name: 💬 Start a discussion - url: https://github.com/greenelab/lab-website-template/discussions - about: I need help, I have a question, or other discussion. - - name: 📚 Docs issue - url: https://github.com/greenelab/lab-website-template-docs/issues - about: I have a question or issue related to the template documentation. diff --git a/.github/ISSUE_TEMPLATE/issue.yaml b/.github/ISSUE_TEMPLATE/issue.yaml deleted file mode 100644 index d812555..0000000 --- a/.github/ISSUE_TEMPLATE/issue.yaml +++ /dev/null @@ -1,38 +0,0 @@ -name: 🐞 Create an issue -description: I think I've discovered a bug, I want to request a feature/change, or other issue. - -body: - - type: checkboxes - attributes: - label: Checks - options: - - label: I have searched **[the docs](https://greene-lab.gitbook.io/lab-website-template-docs)**, [existing issues](https://github.com/greenelab/lab-website-template/issues), and [existing discussions](https://github.com/greenelab/lab-website-template/discussions) for answers first. - required: true - - - type: input - id: repo - attributes: - label: Link to your website repo - description: "In almost all cases, **we cannot help you if you don't provide this**." - placeholder: ex. https://github.com/greenelab/greenelab.com - validations: - required: true - - - type: input - id: version - attributes: - label: Version of Lab Website Template you are using - description: See your `CITATION.cff` file. - placeholder: ex. 1.0.0 - validations: - required: true - - - type: textarea - id: description - attributes: - label: Description - description: | - Describe your issue in as much detail as possible. For example: What happened? What did you expect to happen? How can we reproduce the problem? What browser are you seeing the problem in? - placeholder: Description - validations: - required: true diff --git a/.github/pull_request_template.md b/.github/pull_request_template.md index 6aaf76b..00a0e71 100644 --- a/.github/pull_request_template.md +++ b/.github/pull_request_template.md @@ -1,13 +1,4 @@ -STOP!!! +This website is based on the Lab Website Template. +See its documentation for working with this site: -You are about to open this pull request against THE TEMPLATE ITSELF. You probably meant to open it against your own website repo. - ---- - -FOR THE TEMPLATE MAINTAINER(S) - -New template version checklist: - -- [ ] I have updated CITATION and CHANGELOG as appropriate. -- [ ] I have updated lab-website-template-docs as appropriate. -- [ ] I have checked the testbed as appropriate. +https://greene-lab.gitbook.io/lab-website-template-docs diff --git a/.github/user_pull_request_template.md b/.github/user_pull_request_template.md deleted file mode 100644 index 00a0e71..0000000 --- a/.github/user_pull_request_template.md +++ /dev/null @@ -1,4 +0,0 @@ -This website is based on the Lab Website Template. -See its documentation for working with this site: - -https://greene-lab.gitbook.io/lab-website-template-docs diff --git a/.github/workflows/versioning.yaml b/.github/workflows/versioning.yaml deleted file mode 100644 index e148f36..0000000 --- a/.github/workflows/versioning.yaml +++ /dev/null @@ -1,135 +0,0 @@ -name: versioning -run-name: versioning tasks - -on: - pull_request: - branches: - - main - push: - branches: - - main - -permissions: - contents: write - -jobs: - pull-request: - # only run on template itself, not user instance of template - if: | - github.repository == 'greenelab/lab-website-template' && - github.event_name == 'pull_request' - runs-on: ubuntu-latest - steps: - # for debugging - - uses: crazy-max/ghaction-dump-context@v2 - - if: runner.debug == '1' - uses: mxschmitt/action-tmate@v3 - - - name: Checkout base branch contents - uses: actions/checkout@v4 - with: - ref: main - path: base - - - name: Checkout pr branch contents - uses: actions/checkout@v4 - with: - path: pr - - - name: Install packages - run: npm install yaml semver - - - name: Check version, date, changelog - uses: actions/github-script@v7 - with: - script: | - const { readFileSync } = require("fs"); - const { lte, valid } = require("semver"); - const { parse } = require("yaml"); - - // load and parse file contents - const { version: oldVersion, "date-released": oldDate } = parse( - readFileSync("base/CITATION.cff").toString() - ); - const { version: newVersion, "date-released": newDate } = parse( - readFileSync("pr/CITATION.cff").toString() - ); - const changelog = readFileSync("pr/CHANGELOG.md") - .toString() - .split(/^## /m) - .map((section) => { - const [heading, ...body] = section.split("\n"); - return [heading.trim(), body.join("\n").trim()]; - }); - - // check version - if (!valid(newVersion)) throw Error("Version not valid"); - if (lte(newVersion, oldVersion)) throw Error("Version not updated"); - - // check date - if (new Date(newDate).toISOString().split("T")[0] !== newDate) - throw Error("Date not valid"); - if (new Date(newDate) <= new Date(oldDate)) throw Error("Date not updated"); - - // check changelog - const newSection = changelog.find( - ([heading, body]) => - heading.includes(newVersion) && heading.includes(newDate) && body - ); - if (!newSection) throw Error("Changelog not updated or not valid"); - - push: - # only run on template itself, not user instance of template - if: | - github.repository == 'greenelab/lab-website-template' && - github.event_name == 'push' - runs-on: ubuntu-latest - steps: - # for debugging - - uses: crazy-max/ghaction-dump-context@v2 - - - name: Checkout branch contents - uses: actions/checkout@v4 - - - name: Install packages - run: npm install yaml semver - - # for debugging - - if: runner.debug == '1' - uses: mxschmitt/action-tmate@v3 - - - name: Get version and body - id: version - uses: actions/github-script@v7 - with: - script: | - const { readFileSync } = require("fs"); - const { parse } = require("yaml"); - - // load and parse file contents - const { version, "date-released": date } = parse( - readFileSync("CITATION.cff").toString() - ); - const changelog = readFileSync("CHANGELOG.md") - .toString() - .split(/^## /m) - .map((section) => { - const [heading, ...body] = section.split("\n"); - return [heading.trim(), body.join("\n").trim()]; - }); - - // find changelog body for version - const [, body = ""] = - changelog.find( - ([heading]) => heading.includes(version) && heading.includes(date) - ) || []; - - return { version, body }; - - - name: Create GitHub release - uses: ncipollo/release-action@v1.14.0 - with: - commit: ${{ github.ref }} - tag: v${{ fromJson(steps.version.outputs.result).version }} - name: v${{ fromJson(steps.version.outputs.result).version }} - body: ${{ fromJson(steps.version.outputs.result).body }} diff --git a/CHANGELOG.md b/CHANGELOG.md deleted file mode 100644 index d702c3e..0000000 --- a/CHANGELOG.md +++ /dev/null @@ -1,146 +0,0 @@ -# Changelog - -Reference: common-changelog.org - -## 1.2.0 - 2024-03-08 - -### Changed - -- Update all GitHub Actions to fix "Node v16 deprecated" warnings. -- Sources that Manubot doesn't know how to cite (e.g. wosuid:12345) are now ignored by default if they're from metasources. -- Fix bug where passing tags to tags component manually doesn't work. -- Fix bug in citation (and other) components when `lookup` is blank. -- Fix nested tables bug. -- Dark mode tweaks. -- Various CSS tweaks and fixes. - -### Added - -- Add `image` param to support blog post thumbnails. -- Add `html-proofer` plugin that checks for broken images/links/etc. -- Add `remove` flag to remove a source from a metasource. - -## 1.1.6 - 2023-10-06 - -### Changed - -- Use latest minor versions of Python packages in auto-cite script. - -## 1.1.5 - 2023-05-19 - -### Changed - -- Fix ORCID plugin bug and other cite process tweaks. - -## 1.1.4 - 2023-04-28 - -### Changed - -- Fix ORCID plugin and other cite process bugs. - -## 1.1.3 - 2023-04-20 - -### Changed - -- Fix first-time-setup mv bug. -- Fix citation, float, and portrait component CSS. -- Filter and trim citation info fields. - -## 1.1.2 - 2023-04-11 - -### Changed - -- Fix first-time-setup rm bug. - -## 1.1.1 - 2023-04-06 - -### Changed - -- Change member profile page from col layout to float. -- Fix first time setup. Preserve config formatting and comments. -- Improve Docker cite process behavior. -- Fix post excerpt component start/end markers and special search attr chars. -- Fix misc CSS. - -### Added - -- Add show-title and show-subtitle site config options. -- Include site subtitle in description meta tag. -- Add user pull request template. -- Add title and link fallbacks to citation component. - -## 1.1.0 - 2023-03-17 - -Add alert component, Docker support, accessibility fixes. - -### Changed - -- Fix Lighthouse accessibility issues. -- De-href components when link isn't provided (no hand cursor icon on hover or nav on click). -- In search script, limit highlights by total count instead of char length. -- Grid and link style tweaks. -- Take ORCID icon from Font Awesome. -- Misc bug fixes in tags script, float component. - -### Added - -- Add Docker configuration and scripts for local previewing. -- Add alert component and types. -- Role icon in portrait component hoisted to top left. - -## 1.0.0 - 2023-02-28 - -First official release. - -High-level comparison with pre-releases: - -- Simpler configuration. -- More automation, less setup. -- More customization and flexibility. -- Redesigned components. -- New docs. -- Complete rewrite. -- Culmination of years of feedback. - -### Changed - -- Template is no longer limited to GitHub Pages white-listed Jekyll plugins. Any plugins possible. -- Pull request previews happen right within GitHub instead of needing Netlify. -- Better versioning. `CITATION.cff` file now source of truth for version, and tags/releases enforced. -- Citation-related files in `/_data` must now be named prefixed with the cite plugin they are to be run with, e.g. `sources-2020.yaml` or `orcid-students.yaml`. -- Folder renames for clarity and for better separation of template and user content: `/auto-cite` → `/_cite`, `/css` → `/_styles`, `/js` → `/_scripts`. -- Rename "Tools" page to "Projects" to be more clear and general purpose. -- Rename `extra-links` to `buttons` in `sources.yaml` files. -- Rename `theme.scss` to `-theme.scss`. -- Rename/repurpose components: link → button, two-col → cols, gallery → grid. -- Combine "link" and "role" data lists into single `types.yaml` map. -- Redesign components, change parameters and behavior. -- Update Font Awesome icon names from v5 to v6. -- Change placeholder text, images, and other images. -- Use CSS variables instead of Sass variables. -- Simplify caching method in cite process. -- Simplify Liquid code by including custom Ruby plugins. -- Simplify styles and scripts. - -### Added - -- New docs at greene-lab.gitbook.io/lab-website-template-docs. -- Add automations for first time setup and URL change. -- Write PubMed and Google Scholar automatic citation plugins. -- Automatic citations through GitHub Actions should now work from (most) forks. -- Add optional description and type params for citations. -- Add periodic cite process run that opens a pull request. -- List component filters can now accept arbitrary regex. -- Add light/dark mode toggle. -- Pre-install selection of useful Jekyll plugins, namely Jekyll Spaceship. -- Add author portrait and updated date for blog posts. -- Add richer metadata for SEO. -- Google Fonts link determined automatically from theme file. - -### Removed - -- Remove options from `_config.yaml` to simplify configuration: `baseurl`, `auto-cite`, `logo`. -- Remove `/favicons` folder, hardcode files for logo, icon, and share in `/images`. -- Remove `palettes.scss` and `mixins.scss`. -- Remove banner component (same thing can be achieved with full width section and figure components). -- Remove role component. Combine with portrait component. diff --git a/README.md b/README.md index 29bf9a2..adc2c25 100644 --- a/README.md +++ b/README.md @@ -1,30 +1,7 @@ -

Lab Website Template

-

-Lab Website Template -

-Lab Website Template (LWT) is an easy-to-use, flexible website template for labs. -Spend less time worrying about managing a website and citations, and more time running your lab. +# wu-tecon's Website -👇👇 **Get Started** 👇👇 +Visit **[website url](#)** 🚀 -[**Documentation**](https://greene-lab.gitbook.io/lab-website-template-docs) +_Built with [Lab Website Template](https://greene-lab.gitbook.io/lab-website-template-docs)_ -## Key Features - -- 🤖 Based on Git, GitHub, and Jekyll. -- 📜 Automatically generated citations from simple identifiers (DOI, PubMed, ORCID, and many more) using Manubot. E.g. `doi:1234/5678` -> `title`, `authors`, `publisher`, `date`, etc. -- 🧱 A comprehensive and flexible suite of pre-made components (building blocks) for structuring and styling your website: - - Formatted tables, code blocks, figures, and other basic elements. - - Citations with thumbnails and other rich details. - - List large sets of data with flexible filters and components. - - ...many more -- 👁️ Automatic pull request previews. -- ⚙️ Easy and automated configuration. -- 👥 Team member pages with bios, roles, and social media links. -- 🖋️ Blog posts with tags and rich content. -- 📱 Works and looks good on desktop and mobile. -- 🤝 Great documentation and support (if we do say so ourselves). -- ... and much more! - -![GitHub last commit](https://img.shields.io/github/last-commit/greenelab/lab-website-template) diff --git a/_config.yaml b/_config.yaml index 1c6b790..7579484 100644 --- a/_config.yaml +++ b/_config.yaml @@ -1,19 +1,19 @@ # site properties and page defaults -title: Lab Website Template -subtitle: by the Greene Lab -description: An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more. +title: wu-tecon +subtitle: +description: An engaging 1-3 sentence description of your lab. header: images/background.jpg footer: images/background.jpg proofer: false # site social media and other links links: - email: contact@your-lab.com + email: contact@wu-tecon.com orcid: 0000-0001-8713-9213 google-scholar: ETJoidYAAAAJ - github: your-lab - twitter: YourLabHandle - youtube: YourLabChannel + github: wu-tecon + twitter: wu-tecon + youtube: wu-tecon ### jekyll settings diff --git a/index.md b/index.md index bea6980..5ea9e0f 100644 --- a/index.md +++ b/index.md @@ -1,22 +1,9 @@ --- --- -# Lab Website Template +# wu-tecon's Website -[Lab Website Template](https://github.com/greenelab/lab-website-template) is an easy-to-use, flexible website template for [labs](https://www.greenelab.com/). -Spend less time worrying about managing a website and citations, and more time running your lab. - -{% - include button.html - type="docs" - link="https://greene-lab.gitbook.io/lab-website-template-docs" -%} -{% - include button.html - type="github" - text="On GitHub" - link="greenelab/lab-website-template" -%} +An engaging 1-3 sentence description of your lab. {% include section.html %} diff --git a/testbed.md b/testbed.md deleted file mode 100644 index 6b343a5..0000000 --- a/testbed.md +++ /dev/null @@ -1,437 +0,0 @@ ---- -title: Testbed -header: https://upload.wikimedia.org/wikipedia/commons/thumb/e/ea/Van_Gogh_-_Starry_Night_-_Google_Art_Project.jpg/1024px-Van_Gogh_-_Starry_Night_-_Google_Art_Project.jpg -footer: https://upload.wikimedia.org/wikipedia/commons/thumb/e/ea/Van_Gogh_-_Starry_Night_-_Google_Art_Project.jpg/1024px-Van_Gogh_-_Starry_Night_-_Google_Art_Project.jpg -header-dark: false -footer-dark: false ---- - -# Testbed - -{% include section.html %} - -# Basic formatting - -Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. -Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. -Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. -Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum. - -[External link](https://some-website.org/) - -[Internal link](team) - -_italic text_ - -**bold text** - -~~strike-through text~~ - -
-
-Text with extra blank lines above and below -
-
- -- list item a -- list item b -- list item c - -1. ordered list item 1 -1. ordered list item 2 -1. ordered list item 3 - - - -1. top level list item - - nested list item - 1. even deeper nested list item - -Plain image: - -![plain image](/images/photo.jpg) - -# Heading 1 - -Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. - -## Heading 2 - -Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. - -### Heading 3 - -Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. - -#### Heading 4 - -Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. - -##### Heading 5 - -Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. - -###### Heading 6 - -Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. - ---- - -| TABLE | Game 1 | Game 2 | Game 3 | Total | -| :---- | :----: | :----: | :----: | ----: | -| Anna | 144 | 123 | 218 | 485 | -| Bill | 90 | 175 | 120 | 385 | -| Cara | 102 | 214 | 233 | 549 | - -> It was the best of times it was the worst of times. -> It was the age of wisdom, it was the age of foolishness. -> It was the spring of hope, it was the winter of despair. - -```javascript -// some code with syntax highlighting -const popup = document.querySelector("#popup"); -popup.style.width = "100%"; -popup.innerText = - "Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua."; -``` - -This sentence has `inline code`, useful for making references to variables, packages, versions, etc. within a sentence. - -Lorem ipsum dolor sit amet. -{:.left} -Consectetur adipiscing elit. -{:.center} -Sed do eiusmod tempor incididunt. -{:.right} - -{% include section.html %} - -# Jekyll Spaceship - -| Stage | Direct Products | ATP Yields | -| -----------------: | --------------: | ---------: | -| Glycolysis | 2 ATP | | -| ^^ | 2 NADH | 3--5 ATP | -| Pyruvaye oxidation | 2 NADH | 5 ATP | -| Citric acid cycle | 2 ATP | | -| ^^ | 6 NADH | 15 ATP | -| ^^ | 2 FADH | 3 ATP | -| 30--32 ATP | | | - -$ a \* b = c ^ b $ - -$ 2^{\frac{n-1}{3}} $ - -$ \int_a^b f(x)\,dx. $ - -```mermaid! -pie title Pets adopted by volunteers - "Dogs" : 386 - "Cats" : 85 - "Rats" : 35 -``` - -{% include section.html %} - -# Components - -## Section - -{% include section.html background="images/background.jpg" %} - -Section, `background` - -{% include section.html dark=true %} - -Section, `dark=true` - -{% include section.html background="images/background.jpg" dark=true %} - -Section, `background` `dark=true` - -{% include section.html size="wide" %} - -Section, `size=wide` - -{% include section.html size="full" %} - -Section, `size=full` w/ figure - -{% include figure.html image="https://images.rawpixel.com/image_1000/cHJpdmF0ZS9sci9pbWFnZXMvd2Vic2l0ZS8yMDIyLTA1L2ZsMjYyODgwODcyMjYtaW1hZ2VfMS1rb3k1Zzkxay5qcGc.jpg" link="team" width="100%" %} - -{% include section.html %} - -## Figure - -{% include figure.html image="images/icon.png" %} -{% include figure.html image="images/icon.png" caption="_Lorem_ **ipsum**." %} -{% include figure.html image="images/icon.png" caption="_Lorem_ **ipsum**. `px` width" width="400px" %} -{% include figure.html image="images/icon.png" caption="_Lorem_ **ipsum**. `%` width" link="team" width="50%" %} -{% include figure.html image="images/icon.png" caption="_Lorem_ **ipsum**. `px` height" link="team" height="200px" %} -{% include figure.html image="images/fallback.svg" caption="_Lorem_ **ipsum**. `px` width, svg" link="team" width="400px" %} -{% include figure.html image="images/fallback.svg" caption="_Lorem_ **ipsum**. `%` width, svg" link="team" width="50%" %} -{% include figure.html image="images/fallback.svg" caption="_Lorem_ **ipsum**. `px` height, svg" link="team" height="200px" %} - -{% include section.html %} - -## Button - -{% include button.html type="github" %} -{% include button.html type="github" style="bare" %} -{% include button.html type="github" icon="fa-brands fa-youtube" text="Override Text" tooltip="Override tooltip" %} -{% include button.html type="github" text="" style="bare" %} -{% include button.html type="github" text="" link="github-handle" %} - -{% include section.html %} - -## Icon - -{% include icon.html icon="fa-solid fa-bacteria" %} -{% include icon.html icon="fa-solid fa-virus" %} -{% include icon.html icon="fa-solid fa-flask" %} -{% include icon.html icon="manubot.svg" %} - -{% include icon.html icon="fa-brands fa-github" %} Lorem -{% include icon.html icon="fa-solid fa-microscope" %} Ipsum -{% include icon.html icon="manubot.svg" %} Dolor - -{% include section.html %} - -## Feature - -{% capture text %} -_Lorem_ **ipsum** dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. -{% endcapture%} -{% include feature.html image="images/icon.png" link="team" title="Title" text=text %} -{% include feature.html image="images/icon.png" title="Title" text=text flip=true %} -{% include feature.html link="team" %} - -{% include section.html %} - -## List - -### List citations - -{% include list.html data="citations" component="citation" %} - ---- - -### List projects - -{% include list.html data="projects" component="card" %} - ---- - -### List team members - -{% include list.html data="members" component="portrait" %} - ---- - -### List blog posts - -{% include list.html data="posts" component="post-excerpt" %} - -{% include section.html %} - -## Citation - -{% include citation.html lookup="doi:10.1016/j.csbj.2020.05.017" %} -{% include citation.html lookup="Open collaborative writing" style="rich" %} -{% include citation.html title="Manual title" authors="Manual authors" %} - -{% include section.html %} - -## Card - -{% include card.html image="images/icon.png" link="https://nasa.gov/" title="A Large Card" subtitle="A cool card" description="A cool description" tooltip="A cool tooltip" tags="manual tag" repo="greenelab/lab-website-template" %} -{% include card.html image="images/icon.png" title="A Small Card" subtitle="A cool card" description="_Lorem_ **ipsum**" tooltip="A cool tooltip" tags="manual tag" repo="greenelab/lab-website-template" style="small" %} - -{% include section.html %} - -## Portrait - -{% include portrait.html lookup="jane-smith" %} -{% include portrait.html lookup="john-doe" style="small" %} -{% include portrait.html name="Manual name" style="small" %} -{% include portrait.html style="small" %} - -{% include section.html %} - -## Post Excerpt - -{% include post-excerpt.html lookup="example-post-1" %} -{% include post-excerpt.html title="Manual title" author="Manual author" date="2020-02-20" last_modified_at="" %} - -{% include section.html %} - -## Alert - -{% capture lorem %} -Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. -{% endcapture %} -{% capture content %}**Tip** {{ lorem }}{% endcapture %} -{% include alert.html type="tip" content=content %} -{% capture content %}**Help** {{ lorem }}{% endcapture %} -{% include alert.html type="help" content=content %} -{% capture content %}**Info** {{ lorem }}{% endcapture %} -{% include alert.html type="info" content=content %} -{% capture content %}**Success** {{ lorem }}{% endcapture %} -{% include alert.html type="success" content=content %} -{% capture content %}**Warning** {{ lorem }}{% endcapture %} -{% include alert.html type="warning" content=content %} -{% capture content %}**Error** {{ lorem }}{% endcapture %} -{% include alert.html type="error" content=content %} - -{% include section.html %} - -## Tags - -{% include tags.html tags="ovarian cancer, dataset, gene expression" repo="greenelab/lab-website-template" link="blog" %} - -{% include section.html %} - -## Float - -### Figures - -{% capture content %} -{% include figure.html image="images/icon.png" caption="Caption" width="200px" %} -{% endcapture %} -{% include float.html content=content %} -Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum. -{% include float.html clear=true %} - -### Code - -{% capture content %} - -```javascript -const test = "Lorem ipsum dolor sit amet, consectetur adipiscing elit."; -``` - -{% endcapture %} -{% include float.html content=content flip=true %} -Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Nulla facilisi etiam dignissim diam quis. Id aliquet lectus proin nibh nisl condimentum id venenatis a. Tristique magna sit amet purus gravida quis blandit turpis cursus. Ultrices eros in cursus turpis massa tincidunt dui ut ornare. A cras semper auctor neque vitae tempus quam pellentesque nec. At tellus at urna condimentum mattis pellentesque. Ipsum consequat nisl vel pretium. Ultrices mi tempus imperdiet nulla malesuada pellentesque elit eget gravida. Integer vitae justo eget magna fermentum iaculis eu non diam. Mus mauris vitae ultricies leo integer malesuada nunc vel. Leo integer malesuada nunc vel risus. Ornare arcu odio ut sem nulla pharetra. Purus semper eget duis at tellus at urna condimentum. Enim neque volutpat ac tincidunt vitae semper quis lectus. - -{% include section.html %} - -## Grid - -### Regular - -With Markdown images - -{% capture content %} -![image](https://journals.plos.org/ploscompbiol/article/figure/image?size=inline&id=info:doi/10.1371/journal.pcbi.1007128.g001&rev=2) - -![image](https://ars.els-cdn.com/content/image/1-s2.0-S2001037020302804-gr1.jpg) - -![image](https://iiif.elifesciences.org/lax:32822%2Felife-32822-fig8-v3.tif/full/863,/0/default.webp) - -![image]({{ "/images/icon.png" | relative_url }}) - -![image]({{ "/images/icon.png" | relative_url }}) - -![image]({{ "/images/icon.png" | relative_url }}) -{% endcapture %} -{% include grid.html content=content %} - -### Square - -With figure components - -{% capture content %} -{% include figure.html image="https://journals.plos.org/ploscompbiol/article/figure/image?size=inline&id=info:doi/10.1371/journal.pcbi.1007128.g001&rev=2" %} -{% include figure.html image="https://ars.els-cdn.com/content/image/1-s2.0-S2001037020302804-gr1.jpg" %} -{% include figure.html image="https://iiif.elifesciences.org/lax:32822%2Felife-32822-fig8-v3.tif/full/863,/0/default.webp" %} -{% include figure.html image="images/icon.png" %} -{% include figure.html image="images/icon.png" %} -{% include figure.html image="images/icon.png" %} -{% endcapture %} -{% include grid.html style="square" content=content %} - -### Grid of citations - -{% capture content %} -{% include list.html data="citations" component="citation" style="rich" %} -{% endcapture %} -{% include grid.html content=content %} - -### Grid of blog posts - -{% capture content %} -{% include list.html data="posts" component="post-excerpt" %} -{% endcapture %} -{% include grid.html content=content %} - -{% include section.html %} - -## Cols - -### Text - -{% capture col1 %} -Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. -{% endcapture %} -{% capture col2 %} -Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Nulla facilisi etiam dignissim diam quis. Id aliquet lectus proin nibh nisl condimentum id venenatis a. -{% endcapture %} -{% capture col3 %} -Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Nulla facilisi etiam dignissim diam quis. Id aliquet lectus proin nibh nisl condimentum id venenatis a. Tristique magna sit amet purus gravida quis blandit turpis cursus. Ultrices eros in cursus turpis massa tincidunt dui ut ornare. A cras semper auctor neque vitae tempus quam pellentesque nec. At tellus at urna condimentum mattis pellentesque. Ipsum consequat nisl vel pretium. Ultrices mi tempus imperdiet nulla malesuada pellentesque elit eget gravida. Integer vitae justo eget magna fermentum iaculis eu non diam. Mus mauris vitae ultricies leo integer malesuada nunc vel. Leo integer malesuada nunc vel risus. Ornare arcu odio ut sem nulla pharetra. Purus semper eget duis at tellus at urna condimentum. Enim neque volutpat ac tincidunt vitae semper quis lectus. -{% endcapture %} -{% include cols.html col1=col1 col2=col2 col3=col3 %} - -### Images - -{% capture col1 %} -{% include figure.html image="images/icon.png" caption="Fig. 1a" %} -Lorem _ipsum_ dolor **sit** amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. -{% endcapture %} -{% capture col2 %} -{% include figure.html image="images/icon.png" caption="Fig. 1b" %} -Lorem _ipsum_ dolor **sit** amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. -{% endcapture %} -{% capture col3 %} -{% include figure.html image="images/icon.png" caption="Fig. 1c" %} -Lorem _ipsum_ dolor **sit** amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. -{% endcapture %} -{% include cols.html col1=col1 col2=col2 col3=col3 %} - -### Code - -{% capture col1 %} - -```javascript -const test = "Lorem ipsum dolor sit amet"; -``` - -{% endcapture %} -{% capture col2 %} - -```javascript -const test = "Lorem ipsum dolor sit amet"; -``` - -{% endcapture %} -{% capture col3 %} - -```javascript -const test = "Lorem ipsum dolor sit amet"; -``` - -{% endcapture %} -{% include cols.html col1=col1 col2=col2 col3=col3 %} - -{% include section.html %} - -## Search - -{% include search-box.html %} -{% include search-info.html %} - -{% include section.html %} - -## Site Search - -{% include site-search.html %}