Erro in the Call wrapper function step

[xingqichen]

Hi,

I had follow the step in the Readme.

The install step works well.

I tried to use the Data offered in the Data file, and have an error in the " Call wrapper function " step.
Could you help to figure out what's the reason is it? thanks.
here comes the detail of error:

leukemia.nmf.exp<- runNmfGpuPyCuda(nmf.exp = leukemia.nmf.exp,

•                                k.max = k.max,
  

•                                outer.iter = outer.iter,
  

•                                inner.iter = inner.iter,
  

•                                tmp.path = "/tmp/tmp_leukemia",
  

•                                cpu = TRUE)
  

[1] "2018-06-07 09:54:01 PDT"
**Factorization rank: 2
Error: NMF::nmf - 10/10 fit(s) threw an error.

Error(s) thrown:

• run Test pull request #1: unused arguments (model = list("NMFstd", 2, 0), method = "random")**
  Timing stopped at: 3.102 0.329 3.185

here is my seccsion information:

sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.4

Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] grid splines stats4 parallel stats graphics grDevices utils datasets methods base

other attached packages:
[1] signeR_1.6.1 VariantAnnotation_1.26.0 Rsamtools_1.32.0 Biostrings_2.48.0
[5] XVector_0.20.0 knitr_1.20 Bratwurst_1.0 caret_6.0-80
[9] lattice_0.20-35 YAPSA_1.6.0 RcppCNPy_0.2.9 riverplot_0.6
[13] nnls_1.4 cowplot_0.9.2 ComplexHeatmap_1.18.0 SummarizedExperiment_1.10.1
[17] DelayedArray_0.6.0 BiocParallel_1.14.1 matrixStats_0.53.1 GenomicRanges_1.32.3
[21] GenomeInfoDb_1.16.0 IRanges_2.14.10 S4Vectors_0.18.2 devtools_1.13.5
[25] monocle_2.8.0 DDRTree_0.1.5 irlba_2.3.2 VGAM_1.0-5
[29] ggplot2_2.2.1 Matrix_1.2-14 pheatmap_1.0.10 BiocInstaller_1.30.0
[33] doParallel_1.0.11 iterators_1.0.9 foreach_1.4.4 RColorBrewer_1.1-2
[37] NMF_0.21.0 Biobase_2.40.0 BiocGenerics_0.26.0 cluster_2.0.7-1
[41] rngtools_1.3.1 pkgmaker_0.27 registry_0.5

loaded via a namespace (and not attached):
[1] tidyselect_0.2.4 RSQLite_2.1.1 AnnotationDbi_1.42.1 htmlwidgets_1.2 combinat_0.0-8
[6] trimcluster_0.1-2 docopt_0.4.5 Rtsne_0.13 munsell_0.4.3 codetools_0.2-15
[11] withr_2.1.2 colorspace_1.3-2 fastICA_1.2-1 OrganismDbi_1.22.0 geometry_0.3-6
[16] rstudioapi_0.7 robustbase_0.93-0 dimRed_0.1.0 git2r_0.21.0 slam_0.1-43
[21] GenomeInfoDbData_1.1.0 mnormt_1.5-5 bit64_0.9-7 ipred_0.9-6 biovizBase_1.28.0
[26] diptest_0.75-7 R6_2.2.2 DRR_0.0.3 AnnotationFilter_1.4.0 flexmix_2.3-14
[31] bitops_1.0-6 reshape_0.8.7 assertthat_0.2.0 scales_0.5.0 nnet_7.3-12
[36] gtable_0.2.0 ddalpha_1.3.3 ggbio_1.28.0 ensembldb_2.4.1 timeDate_3043.102
[41] rlang_0.2.1 CVST_0.2-2 RcppRoll_0.3.0 GlobalOptions_0.0.13 rtracklayer_1.40.3
[46] lazyeval_0.2.1 ModelMetrics_1.1.0 acepack_1.4.1 dichromat_2.0-0 broom_0.4.4
[51] checkmate_1.8.5 abind_1.4-5 reshape2_1.4.3 GenomicFeatures_1.32.0 backports_1.1.2
[56] Hmisc_4.1-1 RBGL_1.56.0 lava_1.6.1 tools_3.5.0 psych_1.8.4
[61] gridBase_0.4-7 proxy_0.4-22 Rcpp_0.12.17 plyr_1.8.4 base64enc_0.1-3
[66] progress_1.1.2 zlibbioc_1.26.0 purrr_0.2.5 RCurl_1.95-4.10 densityClust_0.3
[71] prettyunits_1.0.2 rpart_4.1-13 GetoptLong_0.1.6 viridis_0.5.1 sfsmisc_1.1-2
[76] ggrepel_0.8.0 magrittr_1.5 data.table_1.11.4 circlize_0.4.3 RANN_2.5.1
[81] pcaMethods_1.72.0 mvtnorm_1.0-8 whisker_0.3-2 ProtGenerics_1.12.0 lsei_1.2-0
[86] xtable_1.8-2 XML_3.98-1.11 mclust_5.4 sparsesvd_0.1-4 gridExtra_2.3
[91] shape_1.4.4 HSMMSingleCell_0.114.0 compiler_3.5.0 biomaRt_2.36.1 tibble_1.4.2
[96] htmltools_0.3.6 Formula_1.2-3 tidyr_0.8.1 gtrellis_1.12.0 lubridate_1.7.4
[101] DBI_1.0.0 corrplot_0.84 magic_1.5-8 MASS_7.3-50 fpc_2.1-11
[106] SomaticSignatures_2.16.0 gower_0.1.2 bindr_0.1.1 igraph_1.2.1 pkgconfig_2.0.1
[111] GenomicAlignments_1.16.0 foreign_0.8-70 recipes_0.1.2 prodlim_2018.04.18 PMCMR_4.3
[116] bibtex_0.4.2 stringr_1.3.1 digest_0.6.15 graph_1.58.0 htmlTable_1.12
[121] dendextend_1.8.0 curl_3.2 kernlab_0.9-26 modeltools_0.2-21 nloptr_1.0.4
[126] rjson_0.2.19 nlme_3.1-137 bindrcpp_0.2.2 viridisLite_0.3.0 limma_3.36.1
[131] BSgenome_1.48.0 pillar_1.2.3 GGally_1.4.0 KEGGREST_1.20.0 httr_1.3.1
[136] DEoptimR_1.0-8 survival_2.42-3 glue_1.2.0 qlcMatrix_0.9.7 FNN_1.1
[141] png_0.1-7 prabclus_2.2-6 bit_1.1-14 class_7.3-14 stringi_1.2.2
[146] blob_1.1.1 latticeExtra_0.6-28 memoise_1.1.0 dplyr_0.7.5