msbuild

Rscript/Library/mzkit_app/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/SpectrumTree/PackLib/PackAlignment.html

@@ -36,9 +36,9 @@ <h3>Declare</h3>
 export class PackAlignment extends <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/SpectrumTree/Query/Ms2Search.html">Ms2Search</a> {
    # a stream data reader for the reference spectrum
    spectrum: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/SpectrumTree/PackLib/SpectrumReader.html">SpectrumReader</a>;
-   libnames: string;
    # cutoff of the cos similarity
    dotcutoff: double;
+   libnames: string;
    # the library size, get the number of the spectrum in current reference library
    size: integer;
 }

Rscript/Library/mzkit_app/vignettes/clr/BioNovoGene/BioDeep/Chemistry/NCBI/PubChem/PugViewRecord.html

@@ -33,10 +33,10 @@ <h3>Declare</h3>
             <code id="clr_ts">
 # namespace BioNovoGene.BioDeep.Chemistry.NCBI.PubChem
 export class PugViewRecord extends <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/NCBI/PubChem/InformationSection.html">InformationSection</a> {
+   Reference: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/NCBI/PubChem/Reference.html">Reference[]</a>;
    RecordType: string;
    RecordNumber: string;
    RecordTitle: string;
-   Reference: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/NCBI/PubChem/Reference.html">Reference[]</a>;
    Sections: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/NCBI/PubChem/Section.html">Section[]</a>;
 }
 </code>

Rscript/Library/mzkit_app/vignettes/clr/BioNovoGene/BioDeep/Chemistry/TMIC/HMDB/taxonomy.html

@@ -38,11 +38,11 @@ <h3>Declare</h3>
             <code id="clr_ts">
 # namespace BioNovoGene.BioDeep.Chemistry.TMIC.HMDB
 export class taxonomy extends <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/MetaLib/Models/CompoundClass.html">CompoundClass</a> {
-   description: string;
-   direct_parent: string;
    alternative_parents: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/TMIC/HMDB/alternative_parents.html">alternative_parents</a>;
    substituents: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/TMIC/HMDB/substituents.html">substituents</a>;
    external_descriptors: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/TMIC/HMDB/external_descriptors.html">external_descriptors</a>;
+   description: string;
+   direct_parent: string;
    kingdom: string;
    super_class: string;
    class: string;

Rscript/Library/mzkit_app/vignettes/clr/BioNovoGene/BioDeep/MSEngine/Mummichog/ActivityEnrichment.html

@@ -35,6 +35,10 @@ <h3>Declare</h3>
             <code id="clr_ts">
 # namespace BioNovoGene.BioDeep.MSEngine.Mummichog
 export class ActivityEnrichment {
+   # the fisher test p-value
+   Fisher: <a href="/vignettes/clr/Microsoft/VisualBasic/Math/Statistics/Hypothesis/FishersExact/FishersExactPvalues.html">FishersExactPvalues</a>;
+   # the ms1 peak list annotation result
+   Hits: <a href="/vignettes/clr/BioNovoGene/BioDeep/MSEngine/MzQuery.html">MzQuery[]</a>;
    # the network modularity
    Q: double;
    # the metabolite hits input size
@@ -43,10 +47,6 @@ <h3>Declare</h3>
    Background: integer;
    # Q * Input / Background
    Activity: double;
-   # the fisher test p-value
-   Fisher: <a href="/vignettes/clr/Microsoft/VisualBasic/Math/Statistics/Hypothesis/FishersExact/FishersExactPvalues.html">FishersExactPvalues</a>;
-   # the ms1 peak list annotation result
-   Hits: <a href="/vignettes/clr/BioNovoGene/BioDeep/MSEngine/MzQuery.html">MzQuery[]</a>;
    # usually the pathway name
    Name: string;
    # the pathway description details