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Analysis.py
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Analysis.py
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"""
python Analysis.py -b M1 -r FanIn -t pn -s Run_Bias_Scan-M1-FanIn-7-15008.dat -p Pedestal-M1-FanIn-8.dat -m 0 -e 100
"""
import os,sys,getopt, subprocess
boardName = "M1"
#PA = "FanIn"
PA =""
NEvents = "-1"
mask = 0
pedFile = "Pedestal-M1-FanIn-51.dat"
sigFile = "Run_Bias_Scan-M1-FanIn-50-15027.dat"
if __name__=="__main__":
# Initialize these environment variables, in case they are not set
os.environ['SECTORPOS'] = "0"
os.environ['ROTATION'] = "0"
os.environ['SENSORBIAS'] = "300"
try:
opts,args = getopt.getopt(sys.argv[1:],"p:s:b:r:t:e:m:l:y:v:",["pedestal","signal","board","PA","sensorType","events","mask","sector","rot","bias"])
except getopt.GetoptError as err:
print str(err)
usage()
sys.exit(2)
for o, a in opts:
if o in ('-p','--pedestal'):
pedFile = str(a)
if o in ('-s','--signal'):
sigFile = str(a)
if o in ('-b','--board'):
boardName = str(a)
if o in ('-r','--PA'):
PA = str(a)
if o in ('-t','--sensorType'):
if str(a)=="np": os.environ['sensorType'] = 'PType'
if str(a)=="pn": os.environ['sensorType'] = 'NType'
if o in ('-e','--events'):
NEvents = str(a)
if o in('-m','--mask'):
if int(a)==0 or int(a)==1: mask = a
else: sys.exit("choose right masking option: 0 or 1")
if o in('-l','--sector'):
if str(a)=="0" or str(a)=="1" or str(a)=="2": os.environ['SECTORPOS'] = str(a)
else: sys.exit("choose a sector: 0, 1 or 2")
if o in('-y','--rot'):
os.environ['ROTATION'] = str(a)
if o in('-v','--bias'):
os.environ['SENSORBIAS'] = str(a)
#if PA!="FanIn" and PA!="FanUp":
# sys.exit("Wrong PA option! Choose FanIn or FanUp!")
#if boardName!="M1" and boardName!="M2" and boardName!="M3" and boardName!="M4" and boardName!="F1" and boardName!="F3":
# sys.exit("Choose the right board for a testbeam in the May 2016: M1, M3, M4, F1, F3. Otherwise, you need to check all paths.")
#telescopePath = "$KEPLERROOT/eos_"+str(sigFile.split('-')[3])+"/lhcb/testbeam/ut/TemporaryData/May2016/TimePix/RootFiles"
#telescopePath = "$KEPLERROOT/eos_"+str(sigFile.split('-')[3])+"/lhcb/testbeam/ut/TemporaryData/October2016/TelescopeFiles/RootFiles"
telescopePath = "$KEPLERROOT/eos_"+str(sigFile.split('-')[3])+"/lhcb/testbeam/ut/TelescopeData/Oct2016/RootFiles"
if boardName=="M1" or boardName=="M3" or boardName=="M4":
inputPathPedestal = "$KEPLERROOT/eos_"+str(sigFile.split('-')[3])+"/lhcb/testbeam/ut/TemporaryData/May2016/MAMBA"
inputPathSignal = "$KEPLERROOT/eos_"+str(sigFile.split('-')[3])+"/lhcb/testbeam/ut/TemporaryData/May2016/MAMBA"
elif boardName=="F1" or boardName=="F3":
inputPathPedestal = "$KEPLERROOT/eos_"+str(sigFile.split('-')[3])+"/lhcb/testbeam/ut/TemporaryData/LateMay2016/MAMBA"
inputPathSignal = "$KEPLERROOT/eos_"+str(sigFile.split('-')[3])+"/lhcb/testbeam/ut/TemporaryData/LateMay2016/MAMBA"
else:
inputPathPedestal = "$KEPLERROOT/eos_"+str(sigFile.split('-')[3])+"/lhcb/testbeam/ut/TemporaryData/October2016/MAMBA"
inputPathSignal = "$KEPLERROOT/eos_"+str(sigFile.split('-')[3])+"/lhcb/testbeam/ut/TemporaryData/October2016/MAMBA"
#else:
# sys.exit("Input files location is definded for a testbeam in the May 2016. Please go to Analysis.py and change inputPathPedestal and inputPathSignal")
#outputPath = "$KEPLERROOT/eos_"+str(sigFile.split('-')[3])+"/lhcb/testbeam/ut/TemporaryData/May2016/DQMTest"
#outputPath = "$KEPLERROOT/eos_"+str(sigFile.split('-')[3])+"/lhcb/testbeam/ut/TemporaryData/October2016/DQMTest"
outputPath = "$KEPLERROOT/eos_"+str(sigFile.split('-')[3])+"/lhcb/testbeam/ut/TemporaryData/October2016/DQMTemporary"
subprocess.call('source /afs/cern.ch/project/eos/installation/lhcb/etc/setup.sh',shell=True)
subprocess.call('/afs/cern.ch/project/eos/installation/0.3.15/bin/eos.select -b fuse mount $KEPLERROOT/eos_'+str(sigFile.split('-')[3]),shell=True)
if boardName=="M1" or boardName=="M2" or boardName=="M3" or boardName=="M4" or boardName=="F1" or boardName=="F3":
os.environ['OUTPUTFILE'] = sigFile.split('-')[4][:-4]
os.environ['BOARD'] = sigFile.split('-')[1]
os.environ['RUNPLACE'] = sigFile.split('-')[2]
os.environ['RUNNUMBER'] = sigFile.split('-')[3]
os.environ['SCANTYPE'] = sigFile.split('-')[0].split('_')[1]
os.environ['DEFRUN'] = sigFile.split('-')[4][:-4]
os.environ['PEDESTALNUMBER'] = pedFile.split('-')[3][:-4]
os.environ['OUTPUTPATH'] = outputPath
os.environ['EVENTSNUMBER'] = NEvents
inputFilePedestal = inputPathPedestal+"/"+boardName+"/"+PA+"/"+pedFile
inputFileSignal = inputPathSignal+"/"+boardName+"/"+PA+"/"+sigFile
else:
os.environ['OUTPUTFILE'] = sigFile.split('-')[4][:-4]
os.environ['BOARD'] = sigFile.split('-')[2]
os.environ['RUNPLACE'] = sigFile.split('-')[1]
#os.environ['BOARD'] = sigFile.split('-')[1]
#os.environ['RUNPLACE'] = sigFile.split('-')[2]
os.environ['RUNNUMBER'] = sigFile.split('-')[3]
os.environ['SCANTYPE'] = sigFile.split('-')[0].split('_')[1]
os.environ['DEFRUN'] = sigFile.split('-')[4][:-4]
os.environ['PEDESTALNUMBER'] = pedFile.split('-')[3][:-4]
os.environ['OUTPUTPATH'] = outputPath
os.environ['EVENTSNUMBER'] = NEvents
inputFilePedestal = inputPathPedestal+"/"+boardName+"/"+pedFile
inputFileSignal = inputPathSignal+"/"+boardName+"/"+sigFile
print "Input pedestal file: "+inputFilePedestal
print "Input signal file: "+inputFileSignal
if mask == 0: os.environ['MAMBAMASK'] = 'No'
else: os.environ['MAMBAMASK'] = os.environ['BOARD']
#else: os.environ['MAMBAMASK'] = os.environ['RUNPLACE']
shFile = open(os.environ["KEPLERROOT"]+"/../run_"+os.environ["RUNNUMBER"]+".sh","w")
shFile.write('#!/bin/bash\n')
shFile.write('cd $KEPLERROOT/../TbUT\n')
if PA=="":
shFile.write('python options/TbUTPedestal_conf.py -f '+inputFilePedestal+" -p "+outputPath+'/'+boardName+'/output_'+os.environ["RUNNUMBER"]+"\n")
else:
shFile.write('python options/TbUTPedestal_conf.py -f '+inputFilePedestal+" -p "+outputPath+'/'+boardName+'/'+PA+'/output_'+os.environ["RUNNUMBER"]+"\n")
if PA=="":
shFile.write('python options/TbUTRun_conf.py -f '+inputFileSignal+" -p "+outputPath+'/'+boardName+'/output_'+os.environ["RUNNUMBER"]+"\n")
shFile.write('mkdir -p '+outputPath+'/'+boardName+'/output_'+os.environ["RUNNUMBER"]+'\n')
shFile.write('cd '+outputPath+'/'+boardName+'/output_'+os.environ["RUNNUMBER"]+'\n')
shFile.write('echo "1 2 3 4" >>' +outputPath+'/'+boardName+'/output_'+os.environ["RUNNUMBER"]+'/noise_Mamba.dat\n')
else:
shFile.write('python options/TbUTRun_conf.py -f '+inputFileSignal+" -p "+outputPath+'/'+boardName+'/'+PA+'/output_'+os.environ["RUNNUMBER"]+"\n")
shFile.write('mkdir -p '+outputPath+'/'+boardName+'/'+PA+'/output_'+os.environ["RUNNUMBER"]+'\n')
shFile.write('cd '+outputPath+'/'+boardName+'/'+PA+'/output_'+os.environ["RUNNUMBER"]+'\n')
shFile.write('echo "1 2 3 4" >>' +outputPath+'/'+boardName+'/'+PA+'/output_'+os.environ["RUNNUMBER"]+'/noise_Mamba.dat\n')
shFile.write('gaudirun.py $KEPLERROOT/../TbUT/options/TbUTPedestal_'+os.environ["RUNNUMBER"]+'.py\n')
shFile.write('gaudirun.py $KEPLERROOT/../TbUT/options/TbUTRun_'+os.environ["RUNNUMBER"]+'.py\n')
shFile.write('gaudirun.py $KEPLERROOT/../TbUT/options/TbUTRun_'+os.environ["RUNNUMBER"]+'.py\n')
shFile.write('. LbLogin.sh -c x86_64-slc6-gcc48-opt\n')
shFile.write('. SetupProject.sh LHCb v36r2\n')
shFile.write('cd '+os.environ["KEPLERROOT"]+'/../TbUT/scripts/AddTrigTracks\n')
shFile.write('make\n')
if PA=="":
shFile.write('cd '+outputPath+'/'+boardName+'/output_'+os.environ["RUNNUMBER"]+'\n')
else:
shFile.write('cd '+outputPath+'/'+boardName+'/'+PA+'/output_'+os.environ["RUNNUMBER"]+'\n')
if PA=="":
shFile.write(os.environ["KEPLERROOT"]+'/../TbUT/scripts/AddTrigTracks/combDUTwithTrack -i '+sigFile[:-4]+'_Tuple.root -t '+telescopePath+'/Run'+sigFile.split('-')[4][:-4]+'/Kepler-tuple.root -n '+sigFile[:-4]+'.root -o '+sigFile[:-4]+'_Tracks.root\n')
else:
shFile.write(os.environ["KEPLERROOT"]+'/../TbUT/scripts/AddTrigTracks/combDUTwithTrack -i '+sigFile[:-4]+'_Tuple.root -t '+telescopePath+'/Run'+sigFile.split('-')[4][:-4]+'/Kepler-tuple.root -n '+sigFile[:-4]+'.root -o '+sigFile[:-4]+'_Tracks.root\n')
if PA=="":
shFile.write('\nmkdir -p '+outputPath+'/'+boardName+'/output_'+os.environ["RUNNUMBER"]+'/Plots')
else:
shFile.write('\nmkdir -p '+outputPath+'/'+boardName+'/'+PA+'/output_'+os.environ["RUNNUMBER"]+'/Plots')
shFile.write('\nroot -b -q '+os.environ["KEPLERROOT"]+'/../TbUT/scripts/runClusterWithTrackAna.C')
shFile.close()
subprocess.call("chmod +x "+os.environ["KEPLERROOT"]+"/../run_"+os.environ["RUNNUMBER"]+".sh",shell=True)
os.system('/$KEPLERROOT/../run_'+os.environ["RUNNUMBER"]+'.sh')
if PA=="":
if os.path.exists(os.environ["KEPLERROOT"]+"/../LogRunAnalysis_"+os.environ['BOARD']+"_"+os.environ['RUNPLACE']+".dat"):os.system("mv"+os.environ["KEPLERROOT"]+"/../LogRunAnalysis_"+os.environ['BOARD']+"_"+os.environ['RUNPLACE']+".dat "+outputPath+'/'+boardName+'/')
else:
if os.path.exists(os.environ["KEPLERROOT"]+"/../LogRunAnalysis_"+os.environ['BOARD']+"_"+os.environ['RUNPLACE']+".dat"):os.system("mv"+os.environ["KEPLERROOT"]+"/../LogRunAnalysis_"+os.environ['BOARD']+"_"+os.environ['RUNPLACE']+".dat "+outputPath+'/'+boardName+'/'+PA+'/')
if os.path.exists(os.environ["KEPLERROOT"]+"/../run_"+os.environ["RUNNUMBER"]+".sh"):os.system("mv"+os.environ["KEPLERROOT"]+"/../run_"+os.environ["RUNNUMBER"]+".sh "+outputPath+'/'+boardName+'/'+PA+'/output_'+os.environ["RUNNUMBER"]+'/\n')
if os.path.exists(os.environ["KEPLERROOT"]+"/../clusterRun_"+os.environ["RUNNUMBER"]+".sh"):os.system("mv"+os.environ["KEPLERROOT"]+"/../clusterRun_"+os.environ["RUNNUMBER"]+".sh "+outputPath+'/'+boardName+'/'+PA+'/output_'+os.environ["RUNNUMBER"]+'/\n')