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DESCRIPTION
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DESCRIPTION
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Package: scalop
Title: Single Cell Analysis Operations
Version: 1.1.0
Authors@R:
person(given = "Julie",
family = "Laffy",
role = c("aut", "cre"),
email = "[email protected]",
comment = c(ORCID = "YOUR-ORCID-ID"))
Description: A toolbox for the analysis of single-cell RNA-seq data and semi-automated identification of intra-tumour programs.
License: MIT + file LICENSE
URL: https://github.com/jlaffy/scalop
BugReports: https://github.com/jlaffy/scalop/issues
Depends:
R (>= 2.10)
Imports:
AnnotationDbi,
GO.db,
RColorBrewer,
Rcpp,
Rtsne,
TxDb.Hsapiens.UCSC.hg19.knownGene,
biomaRt,
clusterProfiler,
dplyr,
ggplot2,
ggpubr,
ggrepel,
gridExtra,
gtable,
igraph,
irlba,
magrittr,
matrixStats,
mixtools,
msigdbr,
nor1mix,
org.Hs.eg.db,
patchwork,
plyr,
reshape2,
scales,
scran,
stringr,
zeallot
Suggests:
knitr,
pkgdown,
rlang,
rmarkdown,
testthat (>= 2.1.0)
LinkingTo:
Rcpp
VignetteBuilder:
knitr
Remotes:
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.1
biocViews: