From 4af6e207779d84c7ad47af9ffc04ade1b058b12c Mon Sep 17 00:00:00 2001 From: Yohsuke Fukai Date: Fri, 21 Oct 2022 14:22:25 +0900 Subject: [PATCH 1/5] started to add python 3.7 support --- noxfile.py | 2 +- poetry.lock | 1868 +++++++++++++++++++++++++++++++++++++++--------- pyproject.toml | 4 +- 3 files changed, 1539 insertions(+), 335 deletions(-) diff --git a/noxfile.py b/noxfile.py index dae1cc28..7093af45 100644 --- a/noxfile.py +++ b/noxfile.py @@ -20,7 +20,7 @@ package = "laptrack" -python_versions = ["3.10", "3.9", "3.8"] +python_versions = ["3.10", "3.9", "3.8", "3.7"] nox.needs_version = ">= 2021.6.6" nox.options.sessions = ( "pre-commit", diff --git a/poetry.lock b/poetry.lock index ee09c3c3..59a463ac 100644 --- a/poetry.lock +++ b/poetry.lock @@ -6,6 +6,24 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "anyio" +version = "3.6.2" +description = "High level compatibility layer for multiple asynchronous event loop implementations" +category = "dev" +optional = false +python-versions = ">=3.6.2" + +[package.dependencies] +idna = ">=2.8" +sniffio = ">=1.1" +typing-extensions = {version = "*", markers = "python_version < \"3.8\""} + +[package.extras] +doc = ["packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] +test = ["contextlib2", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (<0.15)", "uvloop (>=0.15)"] +trio = ["trio (>=0.16,<0.22)"] + [[package]] name = "appnope" version = "0.1.3" @@ -22,8 +40,11 @@ category = "dev" optional = false python-versions = ">=3.6" +[package.dependencies] +importlib-metadata = {version = ">=0.23,<5", markers = "python_version == \"3.7\""} + [package.extras] -test = ["wheel", "pexpect", "flake8", "coverage"] +test = ["coverage", "flake8", "pexpect", "wheel"] [[package]] name = "argon2-cffi" @@ -35,10 +56,11 @@ python-versions = ">=3.6" [package.dependencies] argon2-cffi-bindings = "*" +typing-extensions = {version = "*", markers = "python_version < \"3.8\""} [package.extras] -dev = ["pre-commit", "cogapp", "tomli", "coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "sphinx-notfound-page", "furo"] -docs = ["sphinx", "sphinx-notfound-page", "furo"] +dev = ["cogapp", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "pre-commit", "pytest", "sphinx", "sphinx-notfound-page", "tomli"] +docs = ["furo", "sphinx", "sphinx-notfound-page"] tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"] [[package]] @@ -53,23 +75,9 @@ python-versions = ">=3.6" cffi = ">=1.0.1" [package.extras] -dev = ["pytest", "cogapp", "pre-commit", "wheel"] +dev = ["cogapp", "pre-commit", "pytest", "wheel"] tests = ["pytest"] -[[package]] -name = "asttokens" -version = "2.0.8" -description = "Annotate AST trees with source code positions" -category = "dev" -optional = false -python-versions = "*" - -[package.dependencies] -six = "*" - -[package.extras] -test = ["astroid (<=2.5.3)", "pytest"] - [[package]] name = "atomicwrites" version = "1.4.1" @@ -87,27 +95,27 @@ optional = false python-versions = ">=3.5" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] -docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "cloudpickle"] +dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy (>=0.900,!=0.940)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "sphinx", "sphinx-notfound-page", "zope.interface"] +docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"] +tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "zope.interface"] +tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"] [[package]] name = "autodoc-pydantic" -version = "1.7.2" +version = "1.8.0" description = "Seamlessly integrate pydantic models in your Sphinx documentation." category = "dev" optional = false -python-versions = ">=3.6.1,<4.0.0" +python-versions = ">=3.6,<4.0.0" [package.dependencies] pydantic = ">=1.5" Sphinx = ">=3.4" [package.extras] -docs = ["sphinx-rtd-theme (>=1.0,<2.0)", "sphinx-tabs (>=3,<4)", "sphinx-copybutton (>=0.4,<0.5)", "sphinxcontrib-mermaid (>=0.7,<0.8)"] -dev = ["sphinx-rtd-theme (>=1.0,<2.0)", "sphinx-tabs (>=3,<4)", "sphinx-copybutton (>=0.4,<0.5)", "sphinxcontrib-mermaid (>=0.7,<0.8)", "pytest (>=6,<7)", "coverage (>=5,<6)", "flake8 (>=3,<4)", "tox (>=3,<4)"] -test = ["pytest (>=6,<7)", "coverage (>=5,<6)"] +dev = ["coverage (>=5,<6)", "flake8 (>=3,<4)", "pytest (>=6,<7)", "sphinx-copybutton (>=0.4,<0.5)", "sphinx-rtd-theme (>=1.0,<2.0)", "sphinx-tabs (>=3,<4)", "sphinxcontrib-mermaid (>=0.7,<0.8)", "tox (>=3,<4)"] +docs = ["sphinx-copybutton (>=0.4,<0.5)", "sphinx-rtd-theme (>=1.0,<2.0)", "sphinx-tabs (>=3,<4)", "sphinxcontrib-mermaid (>=0.7,<0.8)"] +test = ["coverage (>=5,<6)", "pytest (>=6,<7)"] [[package]] name = "babel" @@ -157,7 +165,7 @@ webencodings = "*" [package.extras] css = ["tinycss2 (>=1.1.0,<1.2)"] -dev = ["build (==0.8.0)", "flake8 (==4.0.1)", "hashin (==0.17.0)", "pip-tools (==6.6.2)", "pytest (==7.1.2)", "Sphinx (==4.3.2)", "tox (==3.25.0)", "twine (==4.0.1)", "wheel (==0.37.1)", "black (==22.3.0)", "mypy (==0.961)"] +dev = ["Sphinx (==4.3.2)", "black (==22.3.0)", "build (==0.8.0)", "flake8 (==4.0.1)", "hashin (==0.17.0)", "mypy (==0.961)", "pip-tools (==6.6.2)", "pytest (==7.1.2)", "tox (==3.25.0)", "twine (==4.0.1)", "wheel (==0.37.1)"] [[package]] name = "certifi" @@ -195,7 +203,7 @@ optional = false python-versions = ">=3.6.0" [package.extras] -unicode_backport = ["unicodedata2"] +unicode-backport = ["unicodedata2"] [[package]] name = "click" @@ -207,6 +215,7 @@ python-versions = ">=3.7" [package.dependencies] colorama = {version = "*", markers = "platform_system == \"Windows\""} +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} [[package]] name = "colorama" @@ -230,24 +239,6 @@ colorama = {version = "*", markers = "sys_platform == \"win32\""} [package.extras] development = ["black", "flake8", "mypy", "pytest", "types-colorama"] -[[package]] -name = "contourpy" -version = "1.0.5" -description = "Python library for calculating contours of 2D quadrilateral grids" -category = "dev" -optional = false -python-versions = ">=3.7" - -[package.dependencies] -numpy = ">=1.16" - -[package.extras] -test-no-codebase = ["pillow", "matplotlib", "pytest"] -test-minimal = ["pytest"] -test = ["isort", "flake8", "pillow", "matplotlib", "pytest"] -docs = ["sphinx-rtd-theme", "sphinx", "docutils (<0.18)"] -bokeh = ["selenium", "bokeh"] - [[package]] name = "coverage" version = "6.5.0" @@ -323,8 +314,8 @@ packaging = "*" toml = "*" [package.extras] -pipenv = ["pipenv"] conda = ["pyyaml"] +pipenv = ["pipenv"] [[package]] name = "entrypoints" @@ -334,17 +325,6 @@ category = "dev" optional = false python-versions = ">=3.6" -[[package]] -name = "executing" -version = "1.1.0" -description = "Get the currently executing AST node of a frame, and other information" -category = "dev" -optional = false -python-versions = "*" - -[package.extras] -tests = ["rich", "littleutils", "pytest", "asttokens"] - [[package]] name = "fastjsonschema" version = "2.16.2" @@ -354,7 +334,7 @@ optional = false python-versions = "*" [package.extras] -devel = ["colorama", "jsonschema", "json-spec", "pylint", "pytest", "pytest-benchmark", "pytest-cache", "validictory"] +devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benchmark", "pytest-cache", "validictory"] [[package]] name = "filelock" @@ -377,9 +357,9 @@ optional = false python-versions = ">=3.7" [package.extras] -all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "uharfbuzz (>=0.23.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=14.0.0)", "xattr"] +all = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres", "scipy", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=14.0.0)", "xattr", "zopfli (>=0.1.4)"] graphite = ["lz4 (>=1.7.4.2)"] -interpolatable = ["scipy", "munkres"] +interpolatable = ["munkres", "scipy"] lxml = ["lxml (>=4.0,<5)"] pathops = ["skia-pathops (>=0.5.0)"] plot = ["matplotlib"] @@ -388,7 +368,7 @@ symfont = ["sympy"] type1 = ["xattr"] ufo = ["fs (>=2.2.0,<3)"] unicode = ["unicodedata2 (>=14.0.0)"] -woff = ["zopfli (>=0.1.4)", "brotlicffi (>=0.8.0)", "brotli (>=1.0.1)"] +woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"] [[package]] name = "identify" @@ -419,23 +399,24 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "importlib-metadata" -version = "5.0.0" +version = "4.13.0" description = "Read metadata from Python packages" -category = "dev" +category = "main" optional = false python-versions = ">=3.7" [package.dependencies] +typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""} zipp = ">=0.5" [package.extras] -docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "jaraco.tidelift (>=1.4)"] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"] perf = ["ipython"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"] +testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"] [[package]] name = "importlib-resources" -version = "5.9.0" +version = "5.10.0" description = "Read resources from Python packages" category = "dev" optional = false @@ -445,8 +426,8 @@ python-versions = ">=3.7" zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} [package.extras] -docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"] +testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] [[package]] name = "iniconfig" @@ -458,7 +439,7 @@ python-versions = "*" [[package]] name = "ipykernel" -version = "6.16.0" +version = "6.16.1" description = "IPython Kernel for Jupyter" category = "dev" optional = false @@ -478,15 +459,16 @@ tornado = ">=6.1" traitlets = ">=5.1.0" [package.extras] -test = ["flaky", "ipyparallel", "pre-commit", "pytest-cov", "pytest-timeout", "pytest (>=6.0)"] +docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinxcontrib-github-alt"] +test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-cov", "pytest-timeout"] [[package]] name = "ipython" -version = "8.5.0" +version = "7.34.0" description = "IPython: Productive Interactive Computing" category = "dev" optional = false -python-versions = ">=3.8" +python-versions = ">=3.7" [package.dependencies] appnope = {version = "*", markers = "sys_platform == \"darwin\""} @@ -497,14 +479,13 @@ jedi = ">=0.16" matplotlib-inline = "*" pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""} pickleshare = "*" -prompt-toolkit = ">3.0.1,<3.1.0" -pygments = ">=2.4.0" -stack-data = "*" -traitlets = ">=5" +prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" +pygments = "*" +setuptools = ">=18.5" +traitlets = ">=4.2" [package.extras] -all = ["black", "Sphinx (>=1.3)", "ipykernel", "nbconvert", "nbformat", "ipywidgets", "notebook", "ipyparallel", "qtconsole", "pytest (<7.1)", "pytest-asyncio", "testpath", "curio", "matplotlib (!=3.2.0)", "numpy (>=1.19)", "pandas", "trio"] -black = ["black"] +all = ["Sphinx (>=1.3)", "ipykernel", "ipyparallel", "ipywidgets", "nbconvert", "nbformat", "nose (>=0.10.1)", "notebook", "numpy (>=1.17)", "pygments", "qtconsole", "requests", "testpath"] doc = ["Sphinx (>=1.3)"] kernel = ["ipykernel"] nbconvert = ["nbconvert"] @@ -512,8 +493,7 @@ nbformat = ["nbformat"] notebook = ["ipywidgets", "notebook"] parallel = ["ipyparallel"] qtconsole = ["qtconsole"] -test = ["pytest (<7.1)", "pytest-asyncio", "testpath"] -test_extra = ["pytest (<7.1)", "pytest-asyncio", "testpath", "curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.19)", "pandas", "trio"] +test = ["ipykernel", "nbformat", "nose (>=0.10.1)", "numpy (>=1.17)", "pygments", "requests", "testpath"] [[package]] name = "ipython-genutils" @@ -580,9 +560,11 @@ python-versions = ">=3.7" [package.dependencies] attrs = ">=17.4.0" +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""} pkgutil-resolve-name = {version = ">=1.3.10", markers = "python_version < \"3.9\""} pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2" +typing-extensions = {version = "*", markers = "python_version < \"3.8\""} [package.extras] format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"] @@ -606,7 +588,7 @@ qtconsole = "*" [[package]] name = "jupyter-client" -version = "7.3.5" +version = "7.4.3" description = "Jupyter protocol implementation and client libraries" category = "dev" optional = false @@ -622,8 +604,8 @@ tornado = ">=6.2" traitlets = "*" [package.extras] -doc = ["ipykernel", "myst-parser", "sphinx-rtd-theme", "sphinx (>=1.3.6)", "sphinxcontrib-github-alt"] -test = ["codecov", "coverage", "ipykernel (>=6.5)", "ipython", "mypy", "pre-commit", "pytest", "pytest-asyncio (>=0.18)", "pytest-cov", "pytest-timeout"] +doc = ["ipykernel", "myst-parser", "sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] +test = ["codecov", "coverage", "ipykernel (>=6.12)", "ipython", "mypy", "pre-commit", "pytest", "pytest-asyncio (>=0.18)", "pytest-cov", "pytest-timeout"] [[package]] name = "jupyter-console" @@ -645,7 +627,7 @@ test = ["pexpect"] [[package]] name = "jupyter-core" -version = "4.11.1" +version = "4.11.2" description = "Jupyter core package. A base package on which Jupyter projects rely." category = "dev" optional = false @@ -658,6 +640,35 @@ traitlets = "*" [package.extras] test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"] +[[package]] +name = "jupyter-server" +version = "1.21.0" +description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications." +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +anyio = ">=3.1.0,<4" +argon2-cffi = "*" +jinja2 = "*" +jupyter-client = ">=6.1.12" +jupyter-core = ">=4.7.0" +nbconvert = ">=6.4.4" +nbformat = ">=5.2.0" +packaging = "*" +prometheus-client = "*" +pywinpty = {version = "*", markers = "os_name == \"nt\""} +pyzmq = ">=17" +Send2Trash = "*" +terminado = ">=0.8.3" +tornado = ">=6.1.0" +traitlets = ">=5.1" +websocket-client = "*" + +[package.extras] +test = ["coverage", "ipykernel", "pre-commit", "pytest (>=7.0)", "pytest-console-scripts", "pytest-cov", "pytest-mock", "pytest-timeout", "pytest-tornasync", "requests"] + [[package]] name = "jupyterlab-pygments" version = "0.2.2" @@ -682,6 +693,9 @@ category = "dev" optional = false python-versions = ">=3.7" +[package.dependencies] +typing-extensions = {version = "*", markers = "python_version < \"3.8\""} + [[package]] name = "livereload" version = "2.6.3" @@ -704,23 +718,22 @@ python-versions = ">=3.7" [[package]] name = "matplotlib" -version = "3.6.0" +version = "3.5.3" description = "Python plotting package" category = "dev" optional = false -python-versions = ">=3.8" +python-versions = ">=3.7" [package.dependencies] -contourpy = ">=1.0.1" cycler = ">=0.10" fonttools = ">=4.22.0" kiwisolver = ">=1.0.1" -numpy = ">=1.19" +numpy = ">=1.17" packaging = ">=20.0" pillow = ">=6.2.0" pyparsing = ">=2.2.1" python-dateutil = ">=2.7" -setuptools_scm = ">=7" +setuptools_scm = ">=4,<7" [[package]] name = "matplotlib-inline" @@ -752,6 +765,7 @@ python-versions = ">=3.6" [package.dependencies] mypy-extensions = ">=0.4.3" tomli = ">=1.1.0" +typed-ast = {version = ">=1.4.0,<2", markers = "python_version < \"3.8\""} typing-extensions = ">=3.10" [package.extras] @@ -766,9 +780,41 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "nbclassic" +version = "0.4.5" +description = "A web-based notebook environment for interactive computing" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +argon2-cffi = "*" +ipykernel = "*" +ipython-genutils = "*" +jinja2 = "*" +jupyter-client = ">=6.1.1" +jupyter-core = ">=4.6.1" +jupyter-server = ">=1.8" +nbconvert = ">=5" +nbformat = "*" +nest-asyncio = ">=1.5" +notebook-shim = ">=0.1.0" +prometheus-client = "*" +pyzmq = ">=17" +Send2Trash = ">=1.8.0" +terminado = ">=0.8.3" +tornado = ">=6.1" +traitlets = ">=4.2.1" + +[package.extras] +docs = ["myst-parser", "nbsphinx", "sphinx", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] +json-logging = ["json-logging"] +test = ["coverage", "nbval", "pytest", "pytest-cov", "pytest-tornasync", "requests", "requests-unixsocket", "selenium (==4.1.5)", "testpath"] + [[package]] name = "nbclient" -version = "0.6.8" +version = "0.7.0" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." category = "dev" optional = false @@ -781,12 +827,12 @@ nest-asyncio = "*" traitlets = ">=5.2.2" [package.extras] -sphinx = ["autodoc-traits", "mock", "moto", "myst-parser", "Sphinx (>=1.7)", "sphinx-book-theme"] +sphinx = ["Sphinx (>=1.7)", "autodoc-traits", "mock", "moto", "myst-parser", "sphinx-book-theme"] test = ["black", "check-manifest", "flake8", "ipykernel", "ipython", "ipywidgets", "mypy", "nbconvert", "pip (>=18.1)", "pre-commit", "pytest (>=4.1)", "pytest-asyncio", "pytest-cov (>=2.6.1)", "setuptools (>=60.0)", "testpath", "twine (>=1.11.0)", "xmltodict"] [[package]] name = "nbconvert" -version = "7.1.0" +version = "7.2.2" description = "Converting Jupyter Notebooks" category = "dev" optional = false @@ -811,8 +857,8 @@ tinycss2 = "*" traitlets = ">=5.0" [package.extras] -all = ["ipykernel", "ipython", "ipywidgets (>=7)", "nbsphinx (>=0.2.12)", "pre-commit", "pyppeteer (>=1,<1.1)", "pyqtwebengine (>=5.15)", "pytest", "pytest-cov", "pytest-dependency", "sphinx-rtd-theme", "sphinx (==5.0.2)", "tornado (>=6.1)"] -docs = ["ipython", "nbsphinx (>=0.2.12)", "sphinx-rtd-theme", "sphinx (==5.0.2)"] +all = ["ipykernel", "ipython", "ipywidgets (>=7)", "myst-parser", "nbsphinx (>=0.2.12)", "pre-commit", "pyppeteer (>=1,<1.1)", "pyqtwebengine (>=5.15)", "pytest", "pytest-cov", "pytest-dependency", "sphinx (==5.0.2)", "sphinx-rtd-theme", "tornado (>=6.1)"] +docs = ["ipython", "myst-parser", "nbsphinx (>=0.2.12)", "sphinx (==5.0.2)", "sphinx-rtd-theme"] qtpdf = ["pyqtwebengine (>=5.15)"] qtpng = ["pyqtwebengine (>=5.15)"] serve = ["tornado (>=6.1)"] @@ -821,7 +867,7 @@ webpdf = ["pyppeteer (>=1,<1.1)"] [[package]] name = "nbformat" -version = "5.6.1" +version = "5.7.0" description = "The Jupyter Notebook format" category = "dev" optional = false @@ -829,6 +875,7 @@ python-versions = ">=3.7" [package.dependencies] fastjsonschema = "*" +importlib-metadata = {version = ">=3.6", markers = "python_version < \"3.8\""} jsonschema = ">=2.6" jupyter-core = "*" traitlets = ">=5.1" @@ -846,18 +893,18 @@ python-versions = ">=3.5" [[package]] name = "networkx" -version = "2.8.7" +version = "2.6.3" description = "Python package for creating and manipulating graphs and networks" category = "main" optional = false -python-versions = ">=3.8" +python-versions = ">=3.7" [package.extras] -default = ["numpy (>=1.19)", "scipy (>=1.8)", "matplotlib (>=3.4)", "pandas (>=1.3)"] -developer = ["pre-commit (>=2.20)", "mypy (>=0.981)"] -doc = ["sphinx (>=5)", "pydata-sphinx-theme (>=0.9)", "sphinx-gallery (>=0.10)", "numpydoc (>=1.4)", "pillow (>=9.1)", "nb2plots (>=0.6)", "texext (>=0.6.6)"] -extra = ["lxml (>=4.6)", "pygraphviz (>=1.9)", "pydot (>=1.4.2)", "sympy (>=1.10)"] -test = ["pytest (>=7.1)", "pytest-cov (>=3.0)", "codecov (>=2.1)"] +default = ["matplotlib (>=3.3)", "numpy (>=1.19)", "pandas (>=1.1)", "scipy (>=1.5,!=1.6.1)"] +developer = ["black (==21.5b1)", "pre-commit (>=2.12)"] +doc = ["nb2plots (>=0.6)", "numpydoc (>=1.1)", "pillow (>=8.2)", "pydata-sphinx-theme (>=0.6,<1.0)", "sphinx (>=4.0,<5.0)", "sphinx-gallery (>=0.9,<1.0)", "texext (>=0.6.6)"] +extra = ["lxml (>=4.5)", "pydot (>=1.4.1)", "pygraphviz (>=1.7)"] +test = ["codecov (>=2.1)", "pytest (>=6.2)", "pytest-cov (>=2.12)"] [[package]] name = "nodeenv" @@ -867,9 +914,12 @@ category = "dev" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*" +[package.dependencies] +setuptools = "*" + [[package]] name = "notebook" -version = "6.4.12" +version = "6.5.1" description = "A web-based notebook environment for interactive computing" category = "dev" optional = false @@ -882,6 +932,7 @@ ipython-genutils = "*" jinja2 = "*" jupyter-client = ">=5.3.4" jupyter-core = ">=4.6.1" +nbclassic = "0.4.5" nbconvert = ">=5" nbformat = "*" nest-asyncio = ">=1.5" @@ -893,9 +944,23 @@ tornado = ">=6.1" traitlets = ">=4.2.1" [package.extras] -docs = ["sphinx", "nbsphinx", "sphinxcontrib-github-alt", "sphinx-rtd-theme", "myst-parser"] +docs = ["myst-parser", "nbsphinx", "sphinx", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] json-logging = ["json-logging"] -test = ["pytest", "coverage", "requests", "testpath", "nbval", "selenium", "pytest-cov", "requests-unixsocket"] +test = ["coverage", "nbval", "pytest", "pytest-cov", "requests", "requests-unixsocket", "selenium (==4.1.5)", "testpath"] + +[[package]] +name = "notebook-shim" +version = "0.2.0" +description = "A shim layer for notebook traits and config" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +jupyter-server = ">=1.8,<3" + +[package.extras] +test = ["pytest", "pytest-console-scripts", "pytest-tornasync"] [[package]] name = "nox" @@ -908,12 +973,14 @@ python-versions = ">=3.7" [package.dependencies] argcomplete = ">=1.9.4,<3.0" colorlog = ">=2.6.1,<7.0.0" +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} packaging = ">=20.9" py = ">=1.4,<2.0.0" +typing-extensions = {version = ">=3.7.4", markers = "python_version < \"3.8\""} virtualenv = ">=14" [package.extras] -tox_to_nox = ["jinja2", "tox"] +tox-to-nox = ["jinja2", "tox"] [[package]] name = "nox-poetry" @@ -930,11 +997,11 @@ tomlkit = ">=0.7" [[package]] name = "numpy" -version = "1.23.3" +version = "1.21.6" description = "NumPy is the fundamental package for array computing with Python." category = "main" optional = false -python-versions = ">=3.8" +python-versions = ">=3.7,<3.11" [[package]] name = "packaging" @@ -949,22 +1016,24 @@ pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" [[package]] name = "pandas" -version = "1.5.0" +version = "1.3.5" description = "Powerful data structures for data analysis, time series, and statistics" category = "main" optional = false -python-versions = ">=3.8" +python-versions = ">=3.7.1" [package.dependencies] numpy = [ {version = ">=1.21.0", markers = "python_version >= \"3.10\""}, - {version = ">=1.20.3", markers = "python_version < \"3.10\""}, + {version = ">=1.17.3", markers = "platform_machine != \"aarch64\" and platform_machine != \"arm64\" and python_version < \"3.10\""}, + {version = ">=1.19.2", markers = "platform_machine == \"aarch64\" and python_version < \"3.10\""}, + {version = ">=1.20.0", markers = "platform_machine == \"arm64\" and python_version < \"3.10\""}, ] -python-dateutil = ">=2.8.1" -pytz = ">=2020.1" +python-dateutil = ">=2.7.3" +pytz = ">=2017.3" [package.extras] -test = ["pytest-xdist (>=1.31)", "pytest (>=6.0)", "hypothesis (>=5.5.3)"] +test = ["hypothesis (>=3.58)", "pytest (>=6.0)", "pytest-xdist"] [[package]] name = "pandocfilters" @@ -1034,8 +1103,8 @@ optional = false python-versions = ">=3.7" [package.extras] -docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)", "sphinx (>=4)"] -test = ["appdirs (==1.4.4)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)", "pytest (>=6)"] +docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx (>=4)", "sphinx-autodoc-typehints (>=1.12)"] +test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"] [[package]] name = "pluggy" @@ -1045,9 +1114,12 @@ category = "dev" optional = false python-versions = ">=3.6" +[package.dependencies] +importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} + [package.extras] -testing = ["pytest-benchmark", "pytest"] -dev = ["tox", "pre-commit"] +dev = ["pre-commit", "tox"] +testing = ["pytest", "pytest-benchmark"] [[package]] name = "pockets" @@ -1071,6 +1143,7 @@ python-versions = ">=3.7" [package.dependencies] cfgv = ">=2.0.0" identify = ">=1.0.0" +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} nodeenv = ">=0.11.1" pyyaml = ">=5.1" toml = "*" @@ -1078,7 +1151,7 @@ virtualenv = ">=20.0.8" [[package]] name = "prometheus-client" -version = "0.14.1" +version = "0.15.0" description = "Python client for the Prometheus monitoring system." category = "dev" optional = false @@ -1100,14 +1173,14 @@ wcwidth = "*" [[package]] name = "psutil" -version = "5.9.2" +version = "5.9.3" description = "Cross-platform lib for process and system monitoring in Python." category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [package.extras] -test = ["ipaddress", "mock", "enum34", "pywin32", "wmi"] +test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"] [[package]] name = "ptyprocess" @@ -1117,17 +1190,6 @@ category = "dev" optional = false python-versions = "*" -[[package]] -name = "pure-eval" -version = "0.2.2" -description = "Safely evaluate AST nodes without side effects" -category = "dev" -optional = false -python-versions = "*" - -[package.extras] -tests = ["pytest"] - [[package]] name = "py" version = "1.11.0" @@ -1179,7 +1241,7 @@ optional = false python-versions = ">=3.6.8" [package.extras] -diagrams = ["railroad-diagrams", "jinja2"] +diagrams = ["jinja2", "railroad-diagrams"] [[package]] name = "pyrsistent" @@ -1201,6 +1263,7 @@ python-versions = ">=3.6" atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""} attrs = ">=19.2.0" colorama = {version = "*", markers = "sys_platform == \"win32\""} +importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} iniconfig = "*" packaging = "*" pluggy = ">=0.12,<2.0" @@ -1234,7 +1297,7 @@ six = ">=1.5" [[package]] name = "pytz" -version = "2022.4" +version = "2022.5" description = "World timezone definitions, modern and historical" category = "main" optional = false @@ -1328,7 +1391,7 @@ urllib3 = ">=1.21.1,<1.27" [package.extras] socks = ["PySocks (>=1.5.6,!=1.5.7)"] -use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"] +use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] [[package]] name = "safety" @@ -1343,17 +1406,18 @@ Click = ">=6.0" dparse = ">=0.5.1" packaging = "*" requests = "*" +setuptools = "*" [[package]] name = "scipy" -version = "1.9.1" +version = "1.7.3" description = "SciPy: Scientific Library for Python" category = "main" optional = false -python-versions = ">=3.8,<3.12" +python-versions = ">=3.7,<3.11" [package.dependencies] -numpy = ">=1.18.5,<1.25.0" +numpy = ">=1.16.5,<1.23.0" [[package]] name = "send2trash" @@ -1364,22 +1428,35 @@ optional = false python-versions = "*" [package.extras] +nativelib = ["pyobjc-framework-Cocoa", "pywin32"] +objc = ["pyobjc-framework-Cocoa"] win32 = ["pywin32"] -objc = ["pyobjc-framework-cocoa"] -nativelib = ["pywin32", "pyobjc-framework-cocoa"] + +[[package]] +name = "setuptools" +version = "65.5.0" +description = "Easily download, build, install, upgrade, and uninstall Python packages" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.extras] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"] +testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8 (<5)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mock", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] +testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"] [[package]] name = "setuptools-scm" -version = "7.0.5" +version = "6.4.2" description = "the blessed package to manage your versions by scm tags" category = "dev" optional = false -python-versions = ">=3.7" +python-versions = ">=3.6" [package.dependencies] packaging = ">=20.0" +setuptools = "*" tomli = ">=1.0.0" -typing-extensions = "*" [package.extras] test = ["pytest (>=6.2)", "virtualenv (>20)"] @@ -1393,6 +1470,14 @@ category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" +[[package]] +name = "sniffio" +version = "1.3.0" +description = "Sniff out which async library your code is running under" +category = "dev" +optional = false +python-versions = ">=3.7" + [[package]] name = "snowballstemmer" version = "2.2.0" @@ -1438,8 +1523,8 @@ sphinxcontrib-serializinghtml = ">=1.1.5" [package.extras] docs = ["sphinxcontrib-websupport"] -lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.931)", "docutils-stubs", "types-typed-ast", "types-requests"] -test = ["pytest", "pytest-cov", "html5lib", "cython", "typed-ast"] +lint = ["docutils-stubs", "flake8 (>=3.5.0)", "isort", "mypy (>=0.931)", "types-requests", "types-typed-ast"] +test = ["cython", "html5lib", "pytest", "pytest-cov", "typed-ast"] [[package]] name = "sphinx-autobuild" @@ -1494,8 +1579,8 @@ optional = false python-versions = ">=3.5" [package.extras] +lint = ["docutils-stubs", "flake8", "mypy"] test = ["pytest"] -lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-devhelp" @@ -1506,8 +1591,8 @@ optional = false python-versions = ">=3.5" [package.extras] +lint = ["docutils-stubs", "flake8", "mypy"] test = ["pytest"] -lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-htmlhelp" @@ -1518,8 +1603,8 @@ optional = false python-versions = ">=3.6" [package.extras] +lint = ["docutils-stubs", "flake8", "mypy"] test = ["html5lib", "pytest"] -lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-jsmath" @@ -1530,7 +1615,7 @@ optional = false python-versions = ">=3.5" [package.extras] -test = ["mypy", "flake8", "pytest"] +test = ["flake8", "mypy", "pytest"] [[package]] name = "sphinxcontrib-napoleon" @@ -1553,8 +1638,8 @@ optional = false python-versions = ">=3.5" [package.extras] +lint = ["docutils-stubs", "flake8", "mypy"] test = ["pytest"] -lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-serializinghtml" @@ -1565,25 +1650,9 @@ optional = false python-versions = ">=3.5" [package.extras] -lint = ["flake8", "mypy", "docutils-stubs"] +lint = ["docutils-stubs", "flake8", "mypy"] test = ["pytest"] -[[package]] -name = "stack-data" -version = "0.5.1" -description = "Extract data from python stack frames and tracebacks for informative displays" -category = "dev" -optional = false -python-versions = "*" - -[package.dependencies] -asttokens = "*" -executing = "*" -pure-eval = "*" - -[package.extras] -tests = ["cython", "littleutils", "pygments", "typeguard", "pytest"] - [[package]] name = "terminado" version = "0.16.0" @@ -1598,22 +1667,22 @@ pywinpty = {version = ">=1.1.0", markers = "os_name == \"nt\""} tornado = ">=6.1.0" [package.extras] -test = ["pre-commit", "pytest-timeout", "pytest (>=6.0)"] +test = ["pre-commit", "pytest (>=6.0)", "pytest-timeout"] [[package]] name = "tinycss2" -version = "1.1.1" +version = "1.2.1" description = "A tiny CSS parser" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] webencodings = ">=0.4" [package.extras] -test = ["coverage", "pytest-isort", "pytest-flake8", "pytest-cov", "pytest"] -doc = ["sphinx-rtd-theme", "sphinx"] +doc = ["sphinx", "sphinx_rtd_theme"] +test = ["flake8", "isort", "pytest"] [[package]] name = "toml" @@ -1649,15 +1718,24 @@ python-versions = ">= 3.7" [[package]] name = "traitlets" -version = "5.4.0" +version = "5.5.0" description = "" category = "dev" optional = false python-versions = ">=3.7" [package.extras] +docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"] test = ["pre-commit", "pytest"] +[[package]] +name = "typed-ast" +version = "1.5.4" +description = "a fork of Python 2 and 3 ast modules with type comment support" +category = "dev" +optional = false +python-versions = ">=3.6" + [[package]] name = "typeguard" version = "2.13.3" @@ -1667,12 +1745,12 @@ optional = false python-versions = ">=3.5.3" [package.extras] -doc = ["sphinx-rtd-theme", "sphinx-autodoc-typehints (>=1.2.0)"] -test = ["pytest", "typing-extensions", "mypy"] +doc = ["sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] +test = ["mypy", "pytest", "typing-extensions"] [[package]] name = "typing-extensions" -version = "4.3.0" +version = "4.4.0" description = "Backported and Experimental Type Hints for Python 3.7+" category = "main" optional = false @@ -1687,8 +1765,8 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, <4" [package.extras] -brotli = ["brotlicffi (>=0.8.0)", "brotli (>=1.0.9)", "brotlipy (>=0.6.0)"] -secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "urllib3-secure-extra", "ipaddress"] +brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)", "brotlipy (>=0.6.0)"] +secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"] 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2 +- 3 files changed, 9 insertions(+), 3 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index b0e93f6d..df818351 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -24,7 +24,7 @@ classifiers = [ Changelog = "https://github.com/yfukai/laptrack/releases" [tool.poetry.dependencies] -python = "^3.7.1,<3.11" +python = "^3.7.11,<3.11" click = "^8.0.1" numpy = "^1.21.0" scipy = "^1.7.0" diff --git a/src/laptrack/_cost_matrix.py b/src/laptrack/_cost_matrix.py index 87439337..64f17be8 100644 --- a/src/laptrack/_cost_matrix.py +++ b/src/laptrack/_cost_matrix.py @@ -3,6 +3,7 @@ import numpy as np from scipy.sparse import coo_matrix +from packaging import version from ._coo_matrix_builder import coo_matrix_builder from ._typing_utils import Float @@ -144,12 +145,17 @@ def build_segment_cost_matrix( or no_splitting_cost is None or no_merging_cost is None ): + if version.parse(np.__version__ ) < version.parse("1.22"): + percentile_kwarg = "interpolation" + else: + percentile_kwarg = "method" + alternative_cost = ( np.percentile( # XXX seems numpy / mypy is over-strict here. Will fix later. C.data, # type: ignore alternative_cost_percentile, - method=alternative_cost_percentile_interpolation, + **{percentile_kwarg:alternative_cost_percentile_interpolation}, ) * alternative_cost_factor ) diff --git a/src/laptrack/_tracking.py b/src/laptrack/_tracking.py index 657578c9..559d146d 100644 --- a/src/laptrack/_tracking.py +++ b/src/laptrack/_tracking.py @@ -17,7 +17,7 @@ # https://stackoverflow.com/questions/59037244/mypy-incompatible-import-error-for-conditional-imports # noqa : if TYPE_CHECKING: - from typing import Literal + from typing import Literal # type: ignore else: try: from typing import Literal From e80b0cd915e4c2361bee4778258342dbfa5529ec Mon Sep 17 00:00:00 2001 From: Yohsuke Fukai Date: Sat, 22 Oct 2022 23:20:45 +0900 Subject: [PATCH 3/5] updating tests --- .github/workflows/tests.yml | 3 + noxfile.py | 4 +- poetry.lock | 3125 ----------------------------------- pyproject.toml | 1 + 4 files changed, 7 insertions(+), 3126 deletions(-) delete mode 100644 poetry.lock diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index f02a9b8e..5a56e8a9 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -13,11 +13,14 @@ jobs: include: - { python-version: 3.9, os: ubuntu-latest, session: "pre-commit" } - { python-version: 3.9, os: ubuntu-latest, session: "safety" } + - { python-version: "3.10", os: ubuntu-latest, session: "mypy" } - { python-version: 3.9, os: ubuntu-latest, session: "mypy" } - { python-version: 3.8, os: ubuntu-latest, session: "mypy" } + - { python-version: 3.7, os: ubuntu-latest, session: "mypy" } - { python-version: "3.10", os: ubuntu-latest, session: "tests" } - { python-version: 3.9, os: ubuntu-latest, session: "tests" } - { python-version: 3.8, os: ubuntu-latest, session: "tests" } + - { python-version: 3.7, os: ubuntu-latest, session: "tests" } - { python-version: "3.10", os: windows-latest, session: "tests" } - { python-version: "3.10", os: macos-latest, session: "tests" } - { python-version: 3.9, os: ubuntu-latest, session: "typeguard" } diff --git a/noxfile.py b/noxfile.py index 7093af45..b113e676 100644 --- a/noxfile.py +++ b/noxfile.py @@ -21,6 +21,7 @@ package = "laptrack" python_versions = ["3.10", "3.9", "3.8", "3.7"] +safety_ignore = [44717, 44715, 44716] # ignore numpy 1.21 CVEs nox.needs_version = ">= 2021.6.6" nox.options.sessions = ( "pre-commit", @@ -47,7 +48,8 @@ def safety(session: Session) -> None: """Scan dependencies for insecure packages.""" requirements = session.poetry.export_requirements() session.install("safety") - session.run("safety", "check", "--full-report", f"--file={requirements}") + session.run("safety", "check", "--full-report", f"--file={requirements}", + *[f"--ignore={ignore}" for ignore in safety_ignore]) @session(python=python_versions) diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index 59a463ac..00000000 --- a/poetry.lock +++ /dev/null @@ -1,3125 +0,0 @@ -[[package]] -name = "alabaster" -version = "0.7.12" -description = "A configurable sidebar-enabled Sphinx theme" -category = "dev" -optional = false -python-versions = "*" - -[[package]] -name = "anyio" -version = "3.6.2" -description = "High level compatibility layer for multiple asynchronous event loop implementations" -category = "dev" -optional = false -python-versions = ">=3.6.2" - -[package.dependencies] -idna = ">=2.8" -sniffio = ">=1.1" -typing-extensions = {version = "*", markers = "python_version < \"3.8\""} - -[package.extras] -doc = ["packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] -test = ["contextlib2", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (<0.15)", "uvloop (>=0.15)"] -trio = ["trio (>=0.16,<0.22)"] - 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session.run("safety", "check", "--full-report", f"--file={requirements}", - *[f"--ignore={ignore}" for ignore in safety_ignore]) + session.run( + "safety", + "check", + "--full-report", + f"--file={requirements}", + *[f"--ignore={ignore}" for ignore in safety_ignore], + ) @session(python=python_versions) diff --git a/src/laptrack/_cost_matrix.py b/src/laptrack/_cost_matrix.py index 64f17be8..3959c7e0 100644 --- a/src/laptrack/_cost_matrix.py +++ b/src/laptrack/_cost_matrix.py @@ -2,8 +2,8 @@ from typing import Union import numpy as np -from scipy.sparse import coo_matrix from packaging import version +from scipy.sparse import coo_matrix from ._coo_matrix_builder import coo_matrix_builder from ._typing_utils import Float @@ -145,17 +145,17 @@ def build_segment_cost_matrix( or no_splitting_cost is None or no_merging_cost is None ): - if version.parse(np.__version__ ) < version.parse("1.22"): + if version.parse(np.__version__) < version.parse("1.22"): percentile_kwarg = "interpolation" else: percentile_kwarg = "method" - + alternative_cost = ( np.percentile( # XXX seems numpy / mypy is over-strict here. Will fix later. C.data, # type: ignore alternative_cost_percentile, - **{percentile_kwarg:alternative_cost_percentile_interpolation}, + **{percentile_kwarg: alternative_cost_percentile_interpolation}, ) * alternative_cost_factor ) diff --git a/src/laptrack/_tracking.py b/src/laptrack/_tracking.py index 559d146d..6fdf2a29 100644 --- a/src/laptrack/_tracking.py +++ b/src/laptrack/_tracking.py @@ -17,7 +17,7 @@ # https://stackoverflow.com/questions/59037244/mypy-incompatible-import-error-for-conditional-imports # noqa : if TYPE_CHECKING: - from typing import Literal # type: ignore + from typing import Literal # type: ignore else: try: from typing import Literal From c9fe056e1a6372fac64a43444ccff759da497803 Mon Sep 17 00:00:00 2001 From: Yohsuke Fukai Date: Sun, 23 Oct 2022 15:19:01 +0900 Subject: [PATCH 5/5] updated poetry lock file --- poetry.lock | 1996 +++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 1996 insertions(+) create mode 100644 poetry.lock diff --git a/poetry.lock 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