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references.php
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<!--
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Author: Yongqun 'Oliver' He, Zuoshuang Xiang
The University Of Michigan
He Group
Date: June 2008 - December 2013
Purpose: Ontobee reference page.
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<h3 class="head3_darkred">References</h3>
<p><strong>Please cite Ontobee with the following reference:</strong></p>
<ul>
<li>Xiang Z, Mungall C, Ruttenberg A, He Y. <a href="http://www.ontobee.org/Ontobee_ICBO-2011_Proceeding.pdf">Ontobee: A Linked Data Server and Browser for Ontology Terms</a>. <em>Proceedings of the 2nd International Conference on Biomedical Ontologies (ICBO)</em>, July 28-30, 2011, Buffalo, NY, USA. Pages 279-281. URL: <a href="http://ceur-ws.org/Vol-833/paper48.pdf">http://ceur-ws.org/Vol-833/paper48.pdf</a>. </li>
</ul>
<p><strong>W3C web references:</strong></p>
<ul>
<li>W3C OWL 2: <a href="http://www.w3.org/TR/owl2-overview/">http://www.w3.org/TR/owl2-overview/</a></li>
<li>W3C RDF: <a href="http://www.w3.org/RDF/">http://www.w3.org/RDF/</a></li>
<li>W3C SPARQL: <a href="http://www.w3.org/TR/rdf-sparql-query/">http://www.w3.org/TR/rdf-sparql-query/</a></li>
</ul>
<p><strong>OBO Foundry documents: </strong></p>
<ul>
<li> The ontologies.txt: <a href="http://obo.cvs.sourceforge.net/viewvc/obo/obo/website/cgi-bin/ontologies.txt">http://obo.cvs.sourceforge.net/viewvc/obo/obo/website/cgi-bin/ontologies.txt</a></li>
<li>Configuration of the OBO PURL domain: <a href="https://code.google.com/p/obo-foundry-operations-committee/wiki/OBOPURLDomain">https://code.google.com/p/obo-foundry-operations-committee/wiki/OBOPURLDomain</a> </li>
<li>HOWTO request a prefix and domain for a new resource: <a href="https://code.google.com/p/obo-foundry-operations-committee/wiki/Policy_for_OBO_namespace_and_associated_PURL_requests">https://code.google.com/p/obo-foundry-operations-committee/wiki/Policy_for_OBO_namespace_and_associated_PURL_requests</a> </li>
<li>Setting up Protege to work with OBO ontologies: <a href="https://code.google.com/p/obo-foundry-operations-committee/wiki/SettingUpProtege">https://code.google.com/p/obo-foundry-operations-committee/wiki/SettingUpProtege</a> </li>
<li>OBO Foundry Operations Committee: <a href="http://code.google.com/p/obo-foundry-operations-committee/">http://code.google.com/p/obo-foundry-operations-committee/</a></li>
</ul>
<p><strong>Other related references:</strong></p>
<ul>
<li>
Courtot M, Bug W, Gibson F, Lister AL, Malone J, Schober D, Brinkman RR, Ruttenberg A. <a href="http://www.webont.org/owled/2008/papers/owled2008eu_submission_38.pdf">The OWL of Biomedical Investigations</a>. OWLED 2008.</li>
<li>Ruttenberg A, Rees JA, Samwald M, Marshall MS. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19282504">Life sciences on the Semantic Web: the Neurocommons and beyond</a>. <em>Brief Bioinform</em>. 2009 Mar;10(2):193-204. PMID: 19282504. </li>
<li>Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ; OBI Consortium, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Shah N, Whetzel PL, Lewis S. (2007). <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17989687">The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration</a>. <em>Nat Biotechnol</em> 25 (11): 1251-5. PMID 17989687.</li>
</ul>
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