README.md

Project MIS11602 RNA-seq of Influenza NP CD8+ T cells transcriptome data and analysis

Data:

• MIS11602A1_mouse_NP__CD8___1_trimmed.tsv
• MIS11602A1_mouse_NP__CD8___2_trimmed.tsv
• MIS11602A1_mouse_NP__CD8___3_trimmed.tsv
• MIS11602A1_mouse_NP__CD8___4_trimmed.tsv

Figures:

• Volcano plot of DEGs
• Dot plot of GO terms and Fold Enrichment Scores
• Heatmap of key genes
• Heatmap of metabolic genes
• Multiple Sequence Alignment visualization with annotations

Analysis:

• MIS11602_analysis.ipynb