From babd5efb5c74544ae86ec99faa9f55814c9ef6a4 Mon Sep 17 00:00:00 2001 From: Wadjih Bencheikh Date: Wed, 23 Aug 2023 18:12:48 +0100 Subject: [PATCH] refactor: ROIToolbar using PanelHeader (#58) * refactor: ROIToolbar using PanelHeader * refactor: fix eslint errors * fix: ROIToolbar style * refactor: PreferencesToolbar using react-science * refactor: fix eslint errors --- package-lock.json | 375 ++++++++++++++++------- package.json | 2 +- src/components/roi/ROIAccordion.tsx | 11 +- src/components/roi/ROIEditPreference.tsx | 20 +- src/components/roi/ROITable.tsx | 28 +- src/components/roi/ROIToolbar.tsx | 43 +-- 6 files changed, 305 insertions(+), 174 deletions(-) diff --git a/package-lock.json b/package-lock.json index 8f3f3a8..1943e40 100644 --- a/package-lock.json +++ b/package-lock.json @@ -24,7 +24,7 @@ "react-kbs": "^2.1.1", "react-map-interaction": "^2.1.0", "react-plot": "^1.4.2", - "react-science": "^0.24.3", + "react-science": "^0.26.2", "react-use": "^17.4.0" }, "devDependencies": { @@ -664,8 +664,9 @@ } }, "node_modules/@headlessui/react": { - 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"emdb": "^2.4.0", + "emdb": "^2.4.3", "is-any-array": "^2.0.0", "mf-parser": "^2.3.0", "mf-utilities": "^2.0.4", @@ -5163,8 +5297,9 @@ "license": "MIT" }, "node_modules/node-fetch": { - "version": "2.6.11", - "license": "MIT", + "version": "2.6.13", + "resolved": "https://registry.npmjs.org/node-fetch/-/node-fetch-2.6.13.tgz", + "integrity": "sha512-StxNAxh15zr77QvvkmveSQ8uCQ4+v5FkvNTj0OESmiHu+VRi/gXArXtkWMElOsOUNLtUEvI4yS+rdtOHZTwlQA==", "dependencies": { "whatwg-url": "^5.0.0" }, @@ -5207,7 +5342,8 @@ }, "node_modules/nucleotide": { "version": "2.1.0", - "license": "MIT", + "resolved": "https://registry.npmjs.org/nucleotide/-/nucleotide-2.1.0.tgz", + "integrity": "sha512-DAf9B0uDZebp/oQM0/UWy5+52KlmLnvGir71QGu2kWn02moHz8BRD6vONMgqpq/MY1mvps1Uan4O1n4cMzn2Mw==", "dependencies": { "chemical-groups": "^2.1.0", "mf-utilities": "^2.0.4" @@ -5215,7 +5351,8 @@ }, "node_modules/num-sort": { "version": "2.1.0", - "license": "MIT", + "resolved": "https://registry.npmjs.org/num-sort/-/num-sort-2.1.0.tgz", + "integrity": "sha512-1MQz1Ed8z2yckoBeSfkQHHO9K1yDRxxtotKSJ9yvcTUUxSvfvzEq5GwBrjjHEpMlq/k5gvXdmJ1SbYxWtpNoVg==", "engines": { "node": ">=8" }, @@ -5350,23 +5487,26 @@ } }, "node_modules/openchemlib": { - "version": "8.3.0", - "license": "BSD-3-Clause", + "version": "8.5.0", + "resolved": "https://registry.npmjs.org/openchemlib/-/openchemlib-8.5.0.tgz", + "integrity": "sha512-g9i7JfZRsEZSSxDYoBwd9tGwIp7ZAHTbCJMKphmLApY86hyObr0pOtocIPqsT14bmFJ2oM2A3F73wiuRKOwROg==", "peer": true }, "node_modules/openchemlib-utils": { - "version": "2.4.0", - "license": "MIT", + "version": "2.9.0", + "resolved": "https://registry.npmjs.org/openchemlib-utils/-/openchemlib-utils-2.9.0.tgz", + "integrity": "sha512-El0vE5Tg6BgujWHmnoAZR6azGwl6ESH6ieouUwHnYMgNvBfc63iJDzo7rn0TliK9Gr5BLQh89qfzO6A6eSeh9Q==", "dependencies": { "atom-sorter": "^2.0.0", "ensure-string": "^1.2.0", - "ml-floyd-warshall": "^2.0.1", + "get-value": "^3.0.1", + "ml-floyd-warshall": "^3.0.1", "ml-matrix": "^6.10.4", - "papaparse": "^5.3.2", + "papaparse": "^5.4.1", "sdf-parser": "^6.0.1" }, "peerDependencies": { - "openchemlib": ">=8.0.0" + "openchemlib": ">=8.3.0" } }, "node_modules/optionator": { @@ -5427,7 +5567,8 @@ }, "node_modules/papaparse": { "version": "5.4.1", - "license": "MIT" + "resolved": "https://registry.npmjs.org/papaparse/-/papaparse-5.4.1.tgz", + "integrity": "sha512-HipMsgJkZu8br23pW15uvo6sib6wne/4woLZPlFf3rpDyMe9ywEXUsuD7+6K9PRkJlVT51j/sCOYDKGGS3ZJrw==" }, "node_modules/parent-module": { "version": "1.0.1", @@ -5492,14 +5633,16 @@ }, "node_modules/peaks-similarity": { "version": "3.1.1", - "license": "MIT", + "resolved": "https://registry.npmjs.org/peaks-similarity/-/peaks-similarity-3.1.1.tgz", + "integrity": "sha512-KRG5sO728cRNnzc7YLuXXilhTigP2w3WVpLvWqfhcAXEAinrXah+VirVkucoeL+THq6Vwa20w0j2HNSubm8HAQ==", "dependencies": { "ml-stat": "^1.3.3" } }, "node_modules/peptide": { "version": "2.0.0", - "license": "MIT" + "resolved": "https://registry.npmjs.org/peptide/-/peptide-2.0.0.tgz", + "integrity": "sha512-zhCkPS6qllu4FK3/Bh8RCC3vfyQvVwT+Eg0TDcypsi8SdQb+tKfB1AoHcEj1M664W17pnYqxzyGcr8kVhW0lvQ==" }, "node_modules/picocolors": { "version": "1.0.0", @@ -5678,8 +5821,9 @@ } }, "node_modules/react-error-boundary": { - "version": "4.0.10", - "license": "MIT", + "version": "4.0.11", + "resolved": "https://registry.npmjs.org/react-error-boundary/-/react-error-boundary-4.0.11.tgz", + "integrity": "sha512-U13ul67aP5DOSPNSCWQ/eO0AQEYzEFkVljULQIjMV0KlffTAhxuDoBKdO0pb/JZ8mDhMKFZ9NZi0BmLGUiNphw==", "dependencies": { "@babel/runtime": "^7.12.5" }, @@ -5834,41 +5978,42 @@ } }, "node_modules/react-science": { - "version": "0.24.3", - "resolved": "https://registry.npmjs.org/react-science/-/react-science-0.24.3.tgz", - "integrity": "sha512-acCSBUQJee/sQHS7HlxsbHeGGh2qXF9PEAP+PV3Rfjolj+ldaI3BICy1gMtt08JshM0FeB5Wk3QWNMoEh6ttMQ==", + "version": "0.26.2", + "resolved": "https://registry.npmjs.org/react-science/-/react-science-0.26.2.tgz", + "integrity": "sha512-p5t7i8zYXUzXsjAi7a73wOrMegRKeKsIw/sNh0+dSAzHCLcQOtIBxeyjqd7d1v7D7FTEp+2YEQljRkSMp8+3DQ==", "dependencies": { - "@emotion/react": "^11.10.6", - "@emotion/styled": "^11.10.6", - "@headlessui/react": "^1.7.14", + "@emotion/react": "^11.11.1", + "@emotion/styled": "^11.11.0", + "@headlessui/react": "^1.7.16", "@lukeed/uuid": "^2.0.1", - "@popperjs/core": "^2.11.7", + "@popperjs/core": "^2.11.8", "@radix-ui/react-checkbox": "^1.0.4", + "@radix-ui/react-radio-group": "^1.1.3", "@radix-ui/react-select": "^1.2.2", - "@tanstack/react-query": "^4.29.5", - "@tanstack/react-table": "^8.8.5", + "@tanstack/react-query": "^4.32.6", + "@tanstack/react-table": "^8.9.3", "biologic-converter": "^0.6.0", - "cheminfo-types": "^1.7.0", + "cheminfo-types": "^1.7.2", "d3-scale-chromatic": "^3.0.0", - "filelist-utils": "^1.8.1", - "immer": "^10.0.1", - "jcampconverter": "^9.1.0", + "filelist-utils": "^1.10.1", + "immer": "^10.0.2", + "jcampconverter": "^9.1.1", "lodash": "^4.17.21", "ml-gsd": "^12.1.3", "ml-peak-shape-generator": "^4.1.2", "ml-signal-processing": "^1.0.3", - "ml-spectra-processing": "12.3.0", - "ms-spectrum": "^2.3.1", + "ml-spectra-processing": "^12.5.0", + "ms-spectrum": "^2.4.2", "netcdfjs": "^2.0.2", "react-d3-utils": "^1.0.0", "react-dropzone": "^14.2.3", - "react-error-boundary": "^4.0.4", - "react-icons": "^4.8.0", - "react-inspector": "^6.0.1", + "react-error-boundary": "^4.0.11", + "react-icons": "^4.10.1", + "react-inspector": "^6.0.2", "react-kbs": "^2.1.1", "react-plot": "^1.4.2", "react-popper": "^2.3.0", - "react-shadow": "^20.0.0", + "react-shadow": "^20.4.0", "spc-parser": "^0.7.2", "tinycolor2": "^1.6.0", "use-resize-observer": "^9.1.0", @@ -5880,8 +6025,9 @@ } }, "node_modules/react-shadow": { - "version": "20.2.0", - "license": "MIT", + "version": "20.4.0", + "resolved": "https://registry.npmjs.org/react-shadow/-/react-shadow-20.4.0.tgz", + "integrity": "sha512-sirvAmFja7Ss6MoyQbKWxaQ5IDTAW3Za3Tvegylfr5jXnwKZObHRIyiatefeNlskoGKfuPaZ8DNT052T0SUGcg==", "dependencies": { "humps": "^2.0.1" }, @@ -6341,7 +6487,8 @@ }, "node_modules/sdf-parser": { "version": "6.0.1", - "license": "MIT", + "resolved": "https://registry.npmjs.org/sdf-parser/-/sdf-parser-6.0.1.tgz", + "integrity": "sha512-QorgjqiqTzodCMmYkWYkYJ9nBnOL3w3mWOE9BB1SATUfkFvLOSxHaeZAnJxrHlRkfI7+q3+FsvZOS2OTN74lNA==", "dependencies": { "dynamic-typing": "^1.0.0", "ensure-string": "^1.2.0" @@ -6475,11 +6622,12 @@ "license": "CC0-1.0" }, "node_modules/spectrum-generator": { - "version": "8.0.7", - "license": "MIT", + "version": "8.0.8", + "resolved": "https://registry.npmjs.org/spectrum-generator/-/spectrum-generator-8.0.8.tgz", + "integrity": "sha512-CRCW/ByC9lyRqssRz+S84l/xHhU+p2BzAIQc2OwLqRpmt89bzzr2u8h3WT1GDtXtMnTyDQEH2Yhnpb3PJeZ79Q==", "dependencies": { "ml-peak-shape-generator": "^4.1.2", - "ml-spectra-processing": "^12.0.0" + "ml-spectra-processing": "^12.5.0" } }, "node_modules/spline-interpolator": { @@ -6694,7 +6842,8 @@ }, "node_modules/sum-object-keys": { "version": "1.0.2", - "license": "MIT" + "resolved": "https://registry.npmjs.org/sum-object-keys/-/sum-object-keys-1.0.2.tgz", + "integrity": "sha512-ii+z8zlKwTeVoidaFv6g2kQuhxq4L2GHFMglZsYrKCcwmMBtNlr/V2K1zlgkopNMmuMOheNV0dVKc5Sf/WdhEw==" }, "node_modules/supports-color": { "version": "7.2.0", @@ -7031,7 +7180,8 @@ }, "node_modules/use-sync-external-store": { "version": "1.2.0", - "license": "MIT", + "resolved": "https://registry.npmjs.org/use-sync-external-store/-/use-sync-external-store-1.2.0.tgz", + "integrity": "sha512-eEgnFxGQ1Ife9bzYs6VLi8/4X6CObHMw9Qr9tPY43iKwsPw8xE8+EFsf/2cFZ5S3esXgpWgtSCtLNS41F+sKPA==", "peerDependencies": { "react": "^16.8.0 || ^17.0.0 || ^18.0.0" } @@ -7208,7 +7358,8 @@ }, "node_modules/xy-parser": { "version": "5.0.4", - "license": "MIT", + "resolved": "https://registry.npmjs.org/xy-parser/-/xy-parser-5.0.4.tgz", + "integrity": "sha512-c8rnPqJqFKQzHvBv+rjwm68KaXyUpDN1+9+moF8NKOUrfqJVMCZ1oyE6w14RWNIaQ8kIG8o7CAFht7JOAmpS+w==", "dependencies": { "cheminfo-types": "^1.4.0", "ensure-string": "^1.2.0", diff --git a/package.json b/package.json index 66e472f..1d26040 100644 --- a/package.json +++ b/package.json @@ -63,7 +63,7 @@ "@emotion/styled": "^11.11.0", "image-js": "0.0.0-next-ce6a4f4a28", "immer": "^10.0.2", - "react-science": "^0.24.3", + "react-science": "^0.26.2", "lodash": "^4.17.21", "react-use": "^17.4.0", "react-plot": "^1.4.2", diff --git a/src/components/roi/ROIAccordion.tsx b/src/components/roi/ROIAccordion.tsx index 5076402..f9117e5 100644 --- a/src/components/roi/ROIAccordion.tsx +++ b/src/components/roi/ROIAccordion.tsx @@ -24,10 +24,17 @@ function ROIAccordion() { {isEditing ? ( ) : ( - <> +
- +
)} ); diff --git a/src/components/roi/ROIEditPreference.tsx b/src/components/roi/ROIEditPreference.tsx index 80f324a..f615fcb 100644 --- a/src/components/roi/ROIEditPreference.tsx +++ b/src/components/roi/ROIEditPreference.tsx @@ -1,12 +1,11 @@ import styled from '@emotion/styled'; import startCase from 'lodash/startCase'; import { CSSProperties, memo, useCallback, useMemo, useState } from 'react'; -import { FaCheck, FaTimes } from 'react-icons/fa'; import { Checkbox, ColorPickerDropdown, + PanelPreferencesToolbar, Table, - Toolbar, ValueRenderers, } from 'react-science/ui'; @@ -117,22 +116,7 @@ function ROIEditPreference() { return ( <> - - - - - - - - + Shown columns diff --git a/src/components/roi/ROITable.tsx b/src/components/roi/ROITable.tsx index f402b48..f9d9120 100644 --- a/src/components/roi/ROITable.tsx +++ b/src/components/roi/ROITable.tsx @@ -102,18 +102,24 @@ function ROITable({ identifier }: ROITableProps) { if (rois.length === 0) return No ROIs generated; return ( - - - {columns.map((column) => ( - +
+
+ + {columns.map((column) => ( + + ))} + + {rois.map((roi) => ( + + {columns.map((column) => columnRenderer(column, roi))} + ))} - - {rois.map((roi) => ( - - {columns.map((column) => columnRenderer(column, roi))} - - ))} -
+ + ); } diff --git a/src/components/roi/ROIToolbar.tsx b/src/components/roi/ROIToolbar.tsx index 56998d9..d8c4962 100644 --- a/src/components/roi/ROIToolbar.tsx +++ b/src/components/roi/ROIToolbar.tsx @@ -1,9 +1,8 @@ -import styled from '@emotion/styled'; import { Roi } from 'image-js'; import startCase from 'lodash/startCase'; import { memo, useCallback, useState } from 'react'; -import { FaCog, FaCopy } from 'react-icons/fa'; -import { Toolbar } from 'react-science/ui'; +import { FaCopy } from 'react-icons/fa'; +import { Toolbar, PanelHeader } from 'react-science/ui'; import { useCopyToClipboard } from 'react-use'; import useROIs from '../../hooks/useROIs'; @@ -41,15 +40,6 @@ function roisToTSV(rois: Roi[]) { const copyToClipBoardDefaultText = 'Copy to clipboard'; -const Separator = styled.div` - flex: 1; -`; - -const ROICount = styled.div` - display: flex; - align-items: center; -`; - function ROIToolbar({ identifier }: ROIToolbarProps) { const rois = useROIs(identifier); const viewDispatch = useViewDispatch(); @@ -73,26 +63,19 @@ function ROIToolbar({ identifier }: ROIToolbarProps) { }, [viewDispatch]); return ( - + {rois.length > 0 && ( - - - + + + + + )} - - {`[${rois.length}]`} - - - - + ); }