From ed0a1eafef07f675048b1a6cf09e2584e317b562 Mon Sep 17 00:00:00 2001 From: Davis Vann Bennett Date: Mon, 27 Jan 2025 11:06:17 +0100 Subject: [PATCH 1/6] refactor the entire build system to use hatch instead of poetry. --- .github/dependabot.yml | 11 + .github/workflows/cd.yml | 4 +- .github/workflows/ci.yml | 9 +- .github/workflows/test.yml | 88 +- .gitignore | 3 + .pre-commit-config.yaml | 49 +- README.md | 2 +- docs/index.md | 2 +- docs/usage_zarr_v2.md | 28 +- docs/usage_zarr_v3.md | 4 +- mkdocs.yaml | 4 +- poetry.lock | 1531 ------------------- pyproject.toml | 234 ++- src/pydantic_zarr/core.py | 17 +- src/pydantic_zarr/v2.py | 74 +- src/pydantic_zarr/v3.py | 51 +- tests/{ => test_docs}/__init__.py | 0 tests/{ => test_docs}/test_docs.py | 2 +- tests/test_pydantic_zarr/__init__.py | 0 tests/{ => test_pydantic_zarr}/test_core.py | 0 tests/{ => test_pydantic_zarr}/test_v2.py | 82 +- tests/{ => test_pydantic_zarr}/test_v3.py | 8 +- 22 files changed, 450 insertions(+), 1753 deletions(-) create mode 100644 .github/dependabot.yml delete mode 100644 poetry.lock rename tests/{ => test_docs}/__init__.py (100%) rename tests/{ => test_docs}/test_docs.py (74%) create mode 100644 tests/test_pydantic_zarr/__init__.py rename tests/{ => test_pydantic_zarr}/test_core.py (100%) rename tests/{ => test_pydantic_zarr}/test_v2.py (91%) rename tests/{ => test_pydantic_zarr}/test_v3.py (71%) diff --git a/.github/dependabot.yml b/.github/dependabot.yml new file mode 100644 index 0000000..1191ced --- /dev/null +++ b/.github/dependabot.yml @@ -0,0 +1,11 @@ +--- +version: 2 +updates: + - package-ecosystem: github-actions + directory: / + schedule: + interval: weekly + groups: + actions: + patterns: + - '*' diff --git a/.github/workflows/cd.yml b/.github/workflows/cd.yml index b397aae..687f22d 100644 --- a/.github/workflows/cd.yml +++ b/.github/workflows/cd.yml @@ -6,7 +6,7 @@ jobs: build-n-publish: name: Build and publish Python 🐍 distributions 📦 to PyPI runs-on: ubuntu-latest - if: + if: startsWith(github.ref, 'refs/tags') steps: - uses: actions/checkout@v3 @@ -23,4 +23,4 @@ jobs: - name: Publish distribution 📦 to PyPI uses: pypa/gh-action-pypi-publish@release/v1 with: - password: ${{ secrets.PYPI_API_TOKEN }} + password: ${{ secrets.PYPI_API_TOKEN }} diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 7d5df0b..0629900 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -1,4 +1,4 @@ -name: ci +name: ci on: push: branches: @@ -13,7 +13,7 @@ jobs: - uses: actions/setup-python@v4 with: python-version: 3.x - - run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV + - run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV - uses: actions/cache@v3 with: key: mkdocs-material-${{ env.cache_id }} @@ -21,6 +21,5 @@ jobs: restore-keys: | mkdocs-material- - run: | - pip install poetry - poetry install --with docs - poetry run mkdocs gh-deploy --force \ No newline at end of file + pip install hatch + hatch run docs:deploy --force \ No newline at end of file diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 8859679..396f9a9 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -1,24 +1,92 @@ -name: Linux Testing +# This workflow will install Python dependencies, run tests and lint with a variety of Python versions +# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions + +name: Test on: push: branches: [ main ] pull_request: branches: [ main ] + workflow_dispatch: + +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: true jobs: - build: - runs-on: ubuntu-latest + test: + name: os=${{ matrix.os }}, py=${{ matrix.python-version }}, np=${{ matrix.numpy-version }}, deps=${{ matrix.dependency-set }} + strategy: matrix: - python-version: ['3.9', '3.10', '3.11', '3.12'] + python-version: ['3.11', '3.12', '3.13'] + numpy-version: ['1.25', '2.1'] + dependency-set: ["minimal", "optional"] + os: ["ubuntu-latest"] + include: + - python-version: '3.11' + numpy-version: '1.25' + dependency-set: 'optional' + os: 'macos-latest' + - python-version: '3.13' + numpy-version: '2.1' + dependency-set: 'optional' + os: 'macos-latest' + - python-version: '3.11' + numpy-version: '1.25' + dependency-set: 'optional' + os: 'windows-latest' + - python-version: '3.13' + numpy-version: '2.1' + dependency-set: 'optional' + os: 'windows-latest' + runs-on: ${{ matrix.os }} + steps: - uses: actions/checkout@v4 - - name: Install dependencies - shell: "bash -l {0}" + - name: Set up Python + uses: actions/setup-python@v5 + with: + python-version: ${{ matrix.python-version }} + cache: 'pip' + - name: Install Hatch + run: | + python -m pip install --upgrade pip + pip install hatch + - name: Set Up Hatch Env + run: | + hatch env create test.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} + hatch env run -e test.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} list-env + - name: Run Tests + run: | + hatch env run --env test.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} run-coverage + - name: Upload coverage + uses: codecov/codecov-action@v5 + with: + token: ${{ secrets.CODECOV_TOKEN }} + verbose: true # optional (default = false) + + doctests: + name: doctests + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + with: + fetch-depth: 0 # required for hatch version discovery, which is needed for numcodecs.zarr3 + - name: Set up Python + uses: actions/setup-python@v5 + with: + python-version: '3.13' + cache: 'pip' + - name: Install Hatch + run: | + python -m pip install --upgrade pip + pip install hatch + - name: Set Up Hatch Env run: | - pip install poetry - poetry install - - name: Test + hatch env create doctest + hatch env run -e doctest list-env + - name: Run Tests run: | - poetry run pytest \ No newline at end of file + hatch run docs:test diff --git a/.gitignore b/.gitignore index 2097869..45130f9 100644 --- a/.gitignore +++ b/.gitignore @@ -161,3 +161,6 @@ cython_debug/ # and can be added to the global gitignore or merged into this file. For a more nuclear # option (not recommended) you can uncomment the following to ignore the entire idea folder. #.idea/ + +# VCS versioning +src/pydantic_zarr/_version.py \ No newline at end of file diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 91706bd..cd4b57c 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,19 +1,44 @@ ci: autoupdate_commit_msg: "chore: update pre-commit hooks" + autoupdate_schedule: "monthly" autofix_commit_msg: "style: pre-commit fixes" -default_stages: [commit, push] -default_language_version: - python: python3 + autofix_prs: false +default_stages: [pre-commit, pre-push] repos: + - repo: https://github.com/astral-sh/ruff-pre-commit + rev: v0.9.1 + hooks: + - id: ruff + args: ["--fix", "--show-fixes"] + - id: ruff-format + - repo: https://github.com/codespell-project/codespell + rev: v2.3.0 + hooks: + - id: codespell + args: ["-L", "fo,ihs,kake,te", "-S", "fixture"] - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.4.0 + rev: v5.0.0 hooks: - - id: check-yaml - - repo: https://github.com/astral-sh/ruff-pre-commit - # Ruff version. - rev: v0.1.4 + - id: check-yaml + - id: trailing-whitespace + - repo: https://github.com/pre-commit/mirrors-mypy + rev: v1.14.1 + hooks: + - id: mypy + files: src|tests + additional_dependencies: + - pytest + - pydantic + - repo: https://github.com/scientific-python/cookie + rev: 2024.08.19 + hooks: + - id: sp-repo-review + - repo: https://github.com/pre-commit/pygrep-hooks + rev: v1.10.0 + hooks: + - id: rst-directive-colons + - id: rst-inline-touching-normal + - repo: https://github.com/numpy/numpydoc + rev: v1.8.0 hooks: - # Run the linter. - - id: ruff - # Run the formatter. - - id: ruff-format + - id: numpydoc-validation \ No newline at end of file diff --git a/README.md b/README.md index 29a557f..53c62ed 100644 --- a/README.md +++ b/README.md @@ -14,7 +14,7 @@ This project is under flux -- I want to add [zarr version 3](https://zarr-specs. ## Getting help - Docs: see the [documentation](https://zarr.dev/pydantic-zarr/) for detailed information about this project. -- Chat: We use [Zulip](https://ossci.zulipchat.com/#narrow/channel/423692-Zarr) for project-related chat. +- Chat: We use [Zulip](https://ossci.zulipchat.com/#narrow/channel/423692-Zarr) for project-related chat. ## Example diff --git a/docs/index.md b/docs/index.md index 574a1f1..7da75b5 100644 --- a/docs/index.md +++ b/docs/index.md @@ -2,7 +2,7 @@ [![PyPI](https://img.shields.io/pypi/v/pydantic-zarr)](https://pypi.python.org/pypi/pydantic-zarr) -Static typing and runtime validation for Zarr hierachies. +Static typing and runtime validation for Zarr hierarchies. ## Overview diff --git a/docs/usage_zarr_v2.md b/docs/usage_zarr_v2.md index 7d2ab8f..99ed634 100644 --- a/docs/usage_zarr_v2.md +++ b/docs/usage_zarr_v2.md @@ -107,7 +107,7 @@ instances, then providing those objects as `members` to the constructor of anoth other words, with this approach we create "child nodes" and give those nodes to the "parent node", recursively. -Constructing deeply nested hierarchies this way can be tedious. +Constructing deeply nested hierarchies this way can be tedious. For this reason, `pydantic-zarr` supports an alternative representation of the Zarr hierarchy in the form of a dictionary with `str` keys and `ArraySpec` / `GroupSpec` values, and methods to convert to / from these dictionaries. @@ -118,11 +118,11 @@ This example demonstrates how to create a `GroupSpec` from a `dict` representati ```python from pydantic_zarr.v2 import GroupSpec, ArraySpec -# other than the key representing the root path "", +# other than the key representing the root path "", # the keys must be valid paths in the Zarr storage hierarchy # note that the `members` attribute is `None` for the `GroupSpec` instances in this `dict`. tree = { - "": GroupSpec(members=None, attributes={"root": True}), + "": GroupSpec(members=None, attributes={"root": True}), "/a": GroupSpec(members=None, attributes={"root": False}), "/a/b": ArraySpec(shape=(10,10), dtype="uint8", chunks=(1,1)) } @@ -158,12 +158,12 @@ print(GroupSpec.from_flat(tree).model_dump()) #### flattening `GroupSpec` objects -This is similar to the example above, except that we are working in reverse -- we are making the +This is similar to the example above, except that we are working in reverse -- we are making the flat `dict` from the `GroupSpec` object. ```python from pydantic_zarr.v2 import GroupSpec, ArraySpec -# other than the key representing the root path "", +# other than the key representing the root path "", # the keys must be valid paths in the Zarr storage hierarchy # note that the `members` attribute is `None` for the `GroupSpec` instances in this `dict`. @@ -193,9 +193,9 @@ print(root.to_flat()) ``` #### Implicit groups -`zarr-python` supports creating Zarr arrays or groups deep in the -hierarchy without explicitly creating the intermediate groups first. -`from_flat` models this behavior. For example, `{'/a/b/c': ArraySpec(...)}` implicitly defines the existence of a groups named `a` and `b` (which is contained in `a`). `from_flat` will create the expected `GroupSpec` object from such `dict` instances. +`zarr-python` supports creating Zarr arrays or groups deep in the +hierarchy without explicitly creating the intermediate groups first. +`from_flat` models this behavior. For example, `{'/a/b/c': ArraySpec(...)}` implicitly defines the existence of a groups named `a` and `b` (which is contained in `a`). `from_flat` will create the expected `GroupSpec` object from such `dict` instances. ```python from pydantic_zarr.v2 import GroupSpec, ArraySpec @@ -237,7 +237,7 @@ print(GroupSpec.from_flat(tree).model_dump()) ## Comparing `GroupSpec` and `ArraySpec` models -`GroupSpec` and `ArraySpec` both have `like` methods that take another `GroupSpec` or `ArraySpec` as an argument and return `True` (the models are like each other) or `False` (the models are not like each other). +`GroupSpec` and `ArraySpec` both have `like` methods that take another `GroupSpec` or `ArraySpec` as an argument and return `True` (the models are like each other) or `False` (the models are not like each other). The `like` method works by converting both input models to `dict` via `pydantic.BaseModel.model_dump`, and comparing the `dict` representation of the models. This means that instances of two different subclasses of `GroupSpec`, which would not be considered equal according to the `==` operator, will be considered `like` if and only if they serialize to identical `dict` instances. @@ -251,7 +251,7 @@ arr_a = ArraySpec(shape=(1,), dtype='uint8', chunks=(1,)) arr_b = ArraySpec(shape=(2,), dtype='uint8', chunks=(1,)) # Returns False, because of mismatched shape -print(arr_a.like(arr_b)) +print(arr_a.like(arr_b)) #> False # Returns True, because we exclude shape. @@ -264,11 +264,11 @@ store = zarr.MemoryStore() arr_a_stored = arr_a.to_zarr(store, path='arr_a') # arr_a is like the zarr.Array version of itself -print(arr_a.like(arr_a_stored)) +print(arr_a.like(arr_a_stored)) #> True # Returns False, because of mismatched shape -print(arr_b.like(arr_a_stored)) +print(arr_b.like(arr_a_stored)) #> False # Returns True, because we exclude shape. @@ -284,7 +284,7 @@ print(g_a.like(g_a)) #> True # Returns False, because of mismatched attributes -print(g_a.like(g_b)) +print(g_a.like(g_b)) #> False # Returns True, because we ignore attributes @@ -335,7 +335,7 @@ print(SpecificAttrsGroup(attributes={'a': 100, 'b': 100})) #> zarr_version=2 attributes={'a': 100, 'b': 100} members={} # a Zarr group that only contains arrays -- no subgroups! -# we re-use the TAttr type variable defined in pydantic_zarr.core +# we reuse the TAttr type variable defined in pydantic_zarr.core ArraysOnlyGroup = GroupSpec[TAttr, ArraySpec] try: diff --git a/docs/usage_zarr_v3.md b/docs/usage_zarr_v3.md index 4356c60..57fc073 100644 --- a/docs/usage_zarr_v3.md +++ b/docs/usage_zarr_v3.md @@ -2,8 +2,8 @@ ## Disclaimer -At the moment, [Zarr version 3](https://zarr-specs.readthedocs.io/en/latest/v3/core/v3.0.html) is only *barely* support by this project. That will likely -change when the Zarr storage backend used here ([`zarr-python`](https://zarr.readthedocs.io/en/stable/)) +At the moment, [Zarr version 3](https://zarr-specs.readthedocs.io/en/latest/v3/core/v3.0.html) is only *barely* support by this project. That will likely +change when the Zarr storage backend used here ([`zarr-python`](https://zarr.readthedocs.io/en/stable/)) fully implements version 3. Until then, the only Zarr v3 stuff you can do with this repo is create abstract hierarchies. You cannot use the `to_zarr` or `from_zarr` methods, because the backend for that doesn't exist. diff --git a/mkdocs.yaml b/mkdocs.yaml index 62c3a30..d830b44 100644 --- a/mkdocs.yaml +++ b/mkdocs.yaml @@ -13,11 +13,11 @@ copyright: Copyright © 2016 - 2024 HHMI / Janelia theme: name: material - palette: + palette: # Palette toggle for light mode - scheme: default toggle: - icon: material/brightness-7 + icon: material/brightness-7 name: Switch to dark mode # Palette toggle for dark mode diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index df00e0d..0000000 --- a/poetry.lock +++ /dev/null @@ -1,1531 +0,0 @@ -# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. - -[[package]] -name = "annotated-types" -version = "0.6.0" -description = "Reusable constraint types to use with typing.Annotated" -optional = false -python-versions = ">=3.8" -files = [ - {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"}, - 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+[project.optional-dependencies] +test = [ + "coverage", + "pytest", + "pytest-cov", + "pytest-examples", + ] + +docs = [ + "mkdocs-material", + "mkdocstrings[python]", + "pytest-examples", + "pydantic==2.6" + ] + +[tool.hatch] +version.source = "vcs" +build.hooks.vcs.version-file = "src/pydantic_zarr/_version.py" + +[tool.hatch.envs.test] +features = ["test"] + +[tool.hatch.envs.test.scripts] +test = "pytest tests/test_pydantic_zarr/" +test-cov = "pytest --cov-config=pyproject.toml --cov=pkg --cov-report html --cov=src tests/test_pydantic_zarr" + +[[tool.hatch.envs.test.matrix]] +python = ["3.11", "3.12", "3.13"] + +[tool.hatch.envs.docs] +features = ['docs'] + +[tool.hatch.envs.docs.scripts] +build = "mkdocs build --clean --strict" +serve = "mkdocs serve --watch src" +deploy = "mkdocs gh-deploy" +test = "pytest tests/test_docs" + +[tool.hatch.envs.types] +extra-dependencies = [ + "mypy>=1.0.0", + "pydantic" +] +[tool.hatch.envs.types.scripts] +check = "mypy --install-types --non-interactive {args:src/pydantic_zarr tests}" + +[tool.coverage.run] +source_pkgs = ["pydantic_zarr", "tests"] +branch = true +parallel = true +omit = [ + "src/pydantic_zarr/__about__.py", +] + +[tool.coverage.paths] +pydantic_zarr = ["src/pydantic_zarr", "*/pydantic-zarr/src/pydantic_zarr"] +tests = ["tests", "*/pydantic-zarr/tests"] + +[tool.coverage.report] +exclude_lines = [ + "no cov", + "if __name__ == .__main__.:", + "if TYPE_CHECKING:", +] + +[tool.ruff] +line-length = 100 +force-exclude = true +extend-exclude = [ + ".bzr", + ".direnv", + ".eggs", + ".git", + ".mypy_cache", + ".nox", + ".pants.d", + ".ruff_cache", + ".venv", + "__pypackages__", + "_build", + "buck-out", + "build", + "dist", + "venv", + "docs", +] + +[tool.ruff.lint] +extend-select = [ + "ANN", # flake8-annotations + "B", # flake8-bugbear + "EXE", # flake8-executable + "C4", # flake8-comprehensions + "FA", # flake8-future-annotations + "FLY", # flynt + "FURB", # refurb + "G", # flake8-logging-format + "I", # isort + "ISC", # flake8-implicit-str-concat + "LOG", # flake8-logging + "PERF", # Perflint + "PIE", # flake8-pie + "PGH", # pygrep-hooks + "PT", # flake8-pytest-style + "PYI", # flake8-pyi + "RET", # flake8-return + "RSE", # flake8-raise + "RUF", + "SIM", # flake8-simplify + "SLOT", # flake8-slots + "TCH", # flake8-type-checking + "TRY", # tryceratops + "UP", # pyupgrade + "W", # pycodestyle warnings +] +ignore = [ + "ANN401", + "PT011", # TODO: apply this rule + "PT012", # TODO: apply this rule + "RET505", + "RET506", + "RUF005", + "SIM108", + "TRY003", + "UP038", # https://github.com/astral-sh/ruff/issues/7871 + # https://docs.astral.sh/ruff/formatter/#conflicting-lint-rules + "W191", + "E111", + "E114", + "E117", + "D206", + "D300", + "Q000", + "Q001", + "Q002", + "Q003", + "COM812", + "COM819", +] + +[tool.ruff.lint.extend-per-file-ignores] +"tests/**" = ["ANN001", "ANN201", "RUF029", "SIM117", "SIM300"] + +[tool.mypy] +python_version = "3.11" +ignore_missing_imports = true +namespace_packages = false +strict = true +warn_unreachable = true +plugins = "pydantic.mypy" +enable_error_code = ["ignore-without-code", "redundant-expr", "truthy-bool"] + +[tool.pytest.ini_options] +minversion = "7" +xfail_strict = true +testpaths = ["tests"] +log_cli_level = "INFO" +addopts = [ + "--durations=10", "-ra", "--strict-config", "--strict-markers", +] +filterwarnings = [ + "error" +] + +[tool.repo-review] +ignore = [ + "PC111", # black formatting for docs, not sure if want, + "PC180", # markdown formatter, no thanks + "RTD100", # read the docs, no thanks, + "RTD101", # read the docs, no thanks + "RTD102", # read the docs, no thanks, + "RTD103", # read the docs, no thanks +] \ No newline at end of file diff --git a/src/pydantic_zarr/core.py b/src/pydantic_zarr/core.py index c900cc6..abb832a 100644 --- a/src/pydantic_zarr/core.py +++ b/src/pydantic_zarr/core.py @@ -1,16 +1,15 @@ from __future__ import annotations -from typing_extensions import TypeAlias + +from collections.abc import Mapping from typing import ( Any, - Dict, Literal, - Mapping, - Set, - Union, + TypeAlias, ) + from pydantic import BaseModel, ConfigDict -IncEx: TypeAlias = Union[Set[int], Set[str], Dict[int, Any], Dict[str, Any], None] +IncEx: TypeAlias = set[int] | set[str] | dict[int, Any] | dict[str, Any] | None AccessMode: TypeAlias = Literal["w", "w+", "r", "a"] @@ -32,7 +31,7 @@ def ensure_member_name(data: Any) -> str: if data in ("", ".", ".."): raise ValueError(f"The string {data} is not a valid member name.") return data - raise TypeError(f"Exected a str, got {type(data)}.") + raise TypeError(f"Expected a str, got {type(data)}.") def ensure_key_no_path(data: Any) -> Any: @@ -41,9 +40,7 @@ def ensure_key_no_path(data: Any) -> Any: return data -def model_like( - a: BaseModel, b: BaseModel, exclude: IncEx = None, include: IncEx = None -) -> bool: +def model_like(a: BaseModel, b: BaseModel, exclude: IncEx = None, include: IncEx = None) -> bool: """ A similarity check for a pair pydantic.BaseModel, parametrized over included or excluded fields. diff --git a/src/pydantic_zarr/v2.py b/src/pydantic_zarr/v2.py index dec0e67..5b871cd 100644 --- a/src/pydantic_zarr/v2.py +++ b/src/pydantic_zarr/v2.py @@ -1,29 +1,30 @@ from __future__ import annotations +import os +from collections.abc import Mapping from typing import ( + Annotated, Any, - Dict, Generic, Literal, - Mapping, Self, TypeVar, Union, cast, overload, ) -from typing_extensions import Annotated -from pydantic import AfterValidator, model_validator -from pydantic.functional_validators import BeforeValidator -from zarr.storage import init_group, BaseStore, contains_group, contains_array + import numcodecs -import zarr -from zarr.util import guess_chunks -import os import numpy as np import numpy.typing as npt +import zarr from numcodecs.abc import Codec -from zarr.errors import ContainsGroupError, ContainsArrayError +from pydantic import AfterValidator, model_validator +from pydantic.functional_validators import BeforeValidator +from zarr.errors import ContainsArrayError, ContainsGroupError +from zarr.storage import BaseStore, contains_array, contains_group, init_group +from zarr.util import guess_chunks + from pydantic_zarr.core import ( IncEx, StrictBase, @@ -31,7 +32,6 @@ model_like, ) - TAttr = TypeVar("TAttr", bound=Mapping[str, Any]) TItem = TypeVar("TItem", bound=Union["GroupSpec", "ArraySpec"]) @@ -59,7 +59,7 @@ def stringify_dtype(value: npt.DTypeLike) -> str: def dictify_codec(value: dict[str, Any] | Codec) -> dict[str, Any]: """ Ensure that a `numcodecs.abc.Codec` is converted to a `dict`. If the input is not an - insance of `numcodecs.abc.Codec`, then it is assumed to be a `dict` with string keys + instance of `numcodecs.abc.Codec`, then it is assumed to be a `dict` with string keys and it is returned unaltered. Parameters @@ -184,7 +184,7 @@ def from_array( array: npt.NDArray[Any], chunks: Literal["auto"] | tuple[int, ...] = "auto", attributes: Literal["auto"] | TAttr = "auto", - fill_value: Literal["auto"] | int | float | None = "auto", + fill_value: Literal["auto"] | float | None = "auto", order: Literal["auto", "C", "F"] = "auto", filters: Literal["auto"] | list[CodecDict] | None = "auto", dimension_separator: Literal["auto", "/", "."] = "auto", @@ -355,9 +355,7 @@ def to_zarr( if self.compressor is not None: spec_dict["compressor"] = numcodecs.get_codec(spec_dict["compressor"]) if self.filters is not None: - spec_dict["filters"] = [ - numcodecs.get_codec(f) for f in spec_dict["filters"] - ] + spec_dict["filters"] = [numcodecs.get_codec(f) for f in spec_dict["filters"]] if contains_array(store, path): extant_array = zarr.open_array(store, path=path, mode="r") @@ -376,9 +374,7 @@ def to_zarr( return zarr.open_array( store=extant_array.store, path=extant_array.path, **kwargs ) - result = zarr.create( - store=store, path=path, overwrite=overwrite, **spec_dict, **kwargs - ) + result = zarr.create(store=store, path=path, overwrite=overwrite, **spec_dict, **kwargs) result.attrs.put(attrs) return result @@ -513,7 +509,7 @@ def from_zarr(cls, group: zarr.Group, *, depth: int = -1) -> Self: item_out = GroupSpec.from_zarr(item, depth=new_depth).model_dump() else: msg = ( - f"Unparseable object encountered: {type(item)}. Expected zarr.Array" + f"Unparsable object encountered: {type(item)}. Expected zarr.Array" " or zarr.Group." ) @@ -523,9 +519,7 @@ def from_zarr(cls, group: zarr.Group, *, depth: int = -1) -> Self: result = cls(attributes=attributes, members=members) return result - def to_zarr( - self, store: BaseStore, path: str, *, overwrite: bool = False, **kwargs - ): + def to_zarr(self, store: BaseStore, path: str, *, overwrite: bool = False, **kwargs): """ Serialize this `GroupSpec` to a Zarr group at a specific path in a `zarr.BaseStore`. This operation will create metadata documents in the store. @@ -682,7 +676,7 @@ def to_flat(self, root_path: str = ""): return to_flat(self, root_path=root_path) @classmethod - def from_flat(cls, data: Dict[str, ArraySpec | GroupSpec]) -> Self: + def from_flat(cls, data: dict[str, ArraySpec | GroupSpec]) -> Self: """ Create a `GroupSpec` from a flat hierarchy representation. The flattened hierarchy is a `dict` with the following constraints: keys must be valid paths; values must @@ -723,9 +717,7 @@ def from_zarr(element: zarr.Group) -> GroupSpec: ... def from_zarr(element: zarr.Array) -> ArraySpec: ... -def from_zarr( - element: zarr.Array | zarr.Group, depth: int = -1 -) -> ArraySpec | GroupSpec: +def from_zarr(element: zarr.Array | zarr.Group, depth: int = -1) -> ArraySpec | GroupSpec: """ Recursively parse a `zarr.Group` or `zarr.Array` into an `ArraySpec` or `GroupSpec`. @@ -808,9 +800,7 @@ def to_zarr( return result -def to_flat( - node: ArraySpec | GroupSpec, root_path: str = "" -) -> Dict[str, ArraySpec | GroupSpec]: +def to_flat(node: ArraySpec | GroupSpec, root_path: str = "") -> dict[str, ArraySpec | GroupSpec]: """ Flatten a `GroupSpec` or `ArraySpec`. Converts a `GroupSpec` or `ArraySpec` and a string, into a `dict` with string keys and @@ -865,7 +855,7 @@ def to_flat( return result_sorted_keys -def from_flat(data: Dict[str, ArraySpec | GroupSpec]) -> ArraySpec | GroupSpec: +def from_flat(data: dict[str, ArraySpec | GroupSpec]) -> ArraySpec | GroupSpec: """ Wraps `from_flat_group`, handling the special case where a Zarr array is defined at the root of a hierarchy and thus is not contained by a Zarr group. @@ -896,7 +886,7 @@ def from_flat(data: Dict[str, ArraySpec | GroupSpec]) -> ArraySpec | GroupSpec: # minimal check that the keys are valid invalid_keys = [] - for key in data.keys(): + for key in data: if key.endswith("/"): invalid_keys.append(key) if len(invalid_keys) > 0: @@ -909,7 +899,7 @@ def from_flat(data: Dict[str, ArraySpec | GroupSpec]) -> ArraySpec | GroupSpec: return from_flat_group(data) -def from_flat_group(data: Dict[str, ArraySpec | GroupSpec]) -> GroupSpec: +def from_flat_group(data: dict[str, ArraySpec | GroupSpec]) -> GroupSpec: """ Generate a `GroupSpec` from a flat representation of a hierarchy, i.e. a `dict` with string keys (paths) and `ArraySpec` / `GroupSpec` values (nodes). @@ -935,14 +925,14 @@ def from_flat_group(data: Dict[str, ArraySpec | GroupSpec]) -> GroupSpec: root_name = "" sep = "/" # arrays that will be members of the returned GroupSpec - member_arrays: Dict[str, ArraySpec] = {} + member_arrays: dict[str, ArraySpec] = {} # groups, and their members, that will be members of the returned GroupSpec. # this dict is populated by recursively applying `from_flat_group` function. - member_groups: Dict[str, GroupSpec] = {} + member_groups: dict[str, GroupSpec] = {} # this dict collects the arrayspecs and groupspecs that belong to one of the members of the # groupspecs we are constructing. They will later be aggregated in a recursive step that # populates member_groups - submember_by_parent_name: Dict[str, Dict[str, ArraySpec | GroupSpec]] = {} + submember_by_parent_name: dict[str, dict[str, ArraySpec | GroupSpec]] = {} # copy the input to ensure that mutations are contained inside this function data_copy = data.copy() # Get the root node @@ -959,9 +949,7 @@ def from_flat_group(data: Dict[str, ArraySpec | GroupSpec]) -> GroupSpec: for key, value in data_copy.items(): key_parts = key.split(sep) if key_parts[0] != root_name: - raise ValueError( - f'Invalid path: {key} does not start with "{root_name}{sep}".' - ) + raise ValueError(f'Invalid path: {key} does not start with "{root_name}{sep}".') subparent_name = key_parts[1] if len(key_parts) == 2: @@ -977,17 +965,13 @@ def from_flat_group(data: Dict[str, ArraySpec | GroupSpec]) -> GroupSpec: # not great that we repeat this conditional dict initialization if subparent_name not in submember_by_parent_name: submember_by_parent_name[subparent_name] = {} - submember_by_parent_name[subparent_name][ - sep.join([root_name, *key_parts[2:]]) - ] = value + submember_by_parent_name[subparent_name][sep.join([root_name, *key_parts[2:]])] = value # recurse for subparent_name, submemb in submember_by_parent_name.items(): member_groups[subparent_name] = from_flat_group(submemb) - return GroupSpec( - members={**member_groups, **member_arrays}, attributes=root_node.attributes - ) + return GroupSpec(members={**member_groups, **member_arrays}, attributes=root_node.attributes) def auto_chunks(data: Any) -> tuple[int, ...]: diff --git a/src/pydantic_zarr/v3.py b/src/pydantic_zarr/v3.py index 9081b4c..60ee80e 100644 --- a/src/pydantic_zarr/v3.py +++ b/src/pydantic_zarr/v3.py @@ -1,42 +1,37 @@ from __future__ import annotations +from collections.abc import Mapping, Sequence from typing import ( Any, - Dict, Generic, - List, Literal, - Mapping, - Sequence, - Tuple, TypeVar, Union, cast, overload, ) -from zarr.storage import BaseStore -import zarr + import numpy.typing as npt +import zarr +from zarr.storage import BaseStore from pydantic_zarr.core import StrictBase from pydantic_zarr.v2 import DtypeStr -TAttr = TypeVar("TAttr", bound=Dict[str, Any]) +TAttr = TypeVar("TAttr", bound=dict[str, Any]) TItem = TypeVar("TItem", bound=Union["GroupSpec", "ArraySpec"]) -NodeType = Union[Literal["group"], Literal["array"]] +NodeType = Literal["group", "array"] # todo: introduce a type that represents hexadecimal representations of floats FillValue = Union[ + Literal["Infinity", "-Infinity", "NaN"], bool, int, float, - Literal["Infinity"], - Literal["-Infinity"], - Literal["NaN"], str, - Tuple[float, float], - Tuple[int, ...], + tuple[float, float], + tuple[int, ...], ] @@ -46,7 +41,7 @@ class NamedConfig(StrictBase): class RegularChunkingConfig(StrictBase): - chunk_shape: List[int] + chunk_shape: list[int] class RegularChunking(NamedConfig): @@ -164,9 +159,7 @@ def from_zarr(cls, zarray: zarr.Array): """ raise NotImplementedError - def to_zarr( - self, store: BaseStore, path: str, overwrite: bool = False - ) -> zarr.Array: + def to_zarr(self, store: BaseStore, path: str, overwrite: bool = False) -> zarr.Array: """ Serialize an ArraySpec to a zarr array at a specific path in a zarr store. @@ -253,16 +246,14 @@ def to_zarr(self, store: BaseStore, path: str, overwrite: bool = False): @overload -def from_zarr(element: zarr.Array) -> ArraySpec: - ... +def from_zarr(element: zarr.Array) -> ArraySpec: ... @overload -def from_zarr(element: zarr.Group) -> GroupSpec: - ... +def from_zarr(element: zarr.Group) -> GroupSpec: ... -def from_zarr(element: Union[zarr.Array, zarr.Group]) -> Union[ArraySpec, GroupSpec]: +def from_zarr(element: zarr.Array | zarr.Group) -> ArraySpec | GroupSpec: """ Recursively parse a Zarr group or Zarr array into an ArraySpec or GroupSpec. @@ -285,8 +276,7 @@ def to_zarr( store: BaseStore, path: str, overwrite: bool = False, -) -> zarr.Array: - ... +) -> zarr.Array: ... @overload @@ -295,16 +285,15 @@ def to_zarr( store: BaseStore, path: str, overwrite: bool = False, -) -> zarr.Group: - ... +) -> zarr.Group: ... def to_zarr( - spec: Union[ArraySpec, GroupSpec], + spec: ArraySpec | GroupSpec, store: BaseStore, path: str, overwrite: bool = False, -) -> Union[zarr.Array, zarr.Group]: +) -> zarr.Array | zarr.Group: """ Serialize a GroupSpec or ArraySpec to a zarr group or array at a specific path in a zarr store. @@ -328,9 +317,7 @@ def to_zarr( This operation will create metadata documents in the store. """ - if isinstance(spec, ArraySpec): - result = spec.to_zarr(store, path, overwrite=overwrite) - elif isinstance(spec, GroupSpec): + if isinstance(spec, ArraySpec) or isinstance(spec, GroupSpec): result = spec.to_zarr(store, path, overwrite=overwrite) else: msg = ("Invalid argument for spec. Expected an instance of GroupSpec or ",) diff --git a/tests/__init__.py b/tests/test_docs/__init__.py similarity index 100% rename from tests/__init__.py rename to tests/test_docs/__init__.py diff --git a/tests/test_docs.py b/tests/test_docs/test_docs.py similarity index 74% rename from tests/test_docs.py rename to tests/test_docs/test_docs.py index 9429392..4da937b 100644 --- a/tests/test_docs.py +++ b/tests/test_docs/test_docs.py @@ -1,5 +1,5 @@ import pytest -from pytest_examples import find_examples, CodeExample, EvalExample +from pytest_examples import CodeExample, EvalExample, find_examples @pytest.mark.parametrize("example", find_examples("docs"), ids=str) diff --git a/tests/test_pydantic_zarr/__init__.py b/tests/test_pydantic_zarr/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/test_core.py b/tests/test_pydantic_zarr/test_core.py similarity index 100% rename from tests/test_core.py rename to tests/test_pydantic_zarr/test_core.py diff --git a/tests/test_v2.py b/tests/test_pydantic_zarr/test_v2.py similarity index 91% rename from tests/test_v2.py rename to tests/test_pydantic_zarr/test_v2.py index 89ed784..bfc8d71 100644 --- a/tests/test_v2.py +++ b/tests/test_pydantic_zarr/test_v2.py @@ -1,15 +1,24 @@ from __future__ import annotations + from typing import TYPE_CHECKING, Any, Union -from pydantic import ValidationError + import pytest import zarr -from zarr.errors import ContainsGroupError, ContainsArrayError +from pydantic import ValidationError +from zarr.errors import ContainsArrayError, ContainsGroupError if TYPE_CHECKING: - from typing import Literal, Optional + from typing import Literal + +import sys +from dataclasses import dataclass import numcodecs +import numpy as np +import numpy.typing as npt +from numcodecs import GZip from numcodecs.abc import Codec + from pydantic_zarr.v2 import ( ArraySpec, GroupSpec, @@ -20,16 +29,11 @@ auto_fill_value, auto_filters, auto_order, + from_flat, + from_zarr, to_flat, to_zarr, - from_zarr, - from_flat, ) -from dataclasses import dataclass -import numpy as np -import numpy.typing as npt -import sys -from numcodecs import GZip if sys.version_info < (3, 12): from typing_extensions import TypedDict @@ -50,11 +54,11 @@ def test_array_spec( order: str, dtype: str, dimension_separator: str, - compressor: Optional[Codec], - filters: Optional[tuple[str, ...]], + compressor: Codec | None, + filters: tuple[str, ...] | None, ): store = zarr.MemoryStore() - _filters: Optional[list[Codec]] + _filters: list[Codec] | None if filters is not None: _filters = [] for filter in filters: @@ -143,14 +147,8 @@ def test_array_spec( # test that mode and write_empty_chunks get passed through assert spec_2.to_zarr(store, path="foo", mode="a").read_only is False assert spec_2.to_zarr(store, path="foo", mode="r").read_only is True - assert ( - spec_2.to_zarr(store, path="foo", write_empty_chunks=False)._write_empty_chunks - is False - ) - assert ( - spec_2.to_zarr(store, path="foo", write_empty_chunks=True)._write_empty_chunks - is True - ) + assert spec_2.to_zarr(store, path="foo", write_empty_chunks=False)._write_empty_chunks is False + assert spec_2.to_zarr(store, path="foo", write_empty_chunks=True)._write_empty_chunks is True @dataclass @@ -170,13 +168,11 @@ class WithChunksize: @dataclass -class FakeDaskArray(FakeArray, WithChunksize): - ... +class FakeDaskArray(FakeArray, WithChunksize): ... @dataclass -class FakeXarray(FakeDaskArray, WithAttrs): - ... +class FakeXarray(FakeDaskArray, WithAttrs): ... @pytest.mark.parametrize( @@ -185,9 +181,7 @@ class FakeXarray(FakeDaskArray, WithAttrs): np.zeros((100), dtype="uint8"), FakeArray(shape=(11,), dtype=np.dtype("float64")), FakeDaskArray(shape=(22,), dtype=np.dtype("uint8"), chunksize=(11,)), - FakeXarray( - shape=(22,), dtype=np.dtype("uint8"), chunksize=(11,), attrs={"foo": "bar"} - ), + FakeXarray(shape=(22,), dtype=np.dtype("uint8"), chunksize=(11,), attrs={"foo": "bar"}), ), ) @pytest.mark.parametrize("chunks", ("omit", "auto", (10,))) @@ -271,9 +265,7 @@ def test_array_spec_from_array( @pytest.mark.parametrize("order", ("C", "F")) @pytest.mark.parametrize("dtype", ("bool", "uint8", np.dtype("uint8"), "float64")) @pytest.mark.parametrize("dimension_separator", (".", "/")) -@pytest.mark.parametrize( - "compressor", (numcodecs.LZMA().get_config(), numcodecs.GZip()) -) +@pytest.mark.parametrize("compressor", (numcodecs.LZMA().get_config(), numcodecs.GZip())) @pytest.mark.parametrize( "filters", (None, ("delta",), ("scale_offset",), ("delta", "scale_offset")) ) @@ -283,9 +275,9 @@ def test_serialize_deserialize_groupspec( dtype: str, dimension_separator: Literal[".", "/"], compressor: Any, - filters: Optional[tuple[str, ...]], + filters: tuple[str, ...] | None, ): - _filters: Optional[list[Codec]] + _filters: list[Codec] | None if filters is not None: _filters = [] for filter in filters: @@ -374,7 +366,7 @@ def test_shape_chunks(): """ Test that the length of the chunks and the shape match """ - for a, b in zip(range(1, 5), range(2, 6)): + for a, b in zip(range(1, 5), range(2, 6), strict=False): with pytest.raises(ValidationError): ArraySpec(shape=(1,) * a, chunks=(1,) * b, dtype="uint8", attributes={}) with pytest.raises(ValidationError): @@ -494,9 +486,7 @@ def test_member_name(data: str): ( GroupSpec( attributes={"foo": 10}, - members={ - "a": ArraySpec.from_array(np.arange(5), attributes={"foo": 100}) - }, + members={"a": ArraySpec.from_array(np.arange(5), attributes={"foo": 100})}, ), { "": GroupSpec(attributes={"foo": 10}, members=None), @@ -509,11 +499,7 @@ def test_member_name(data: str): members={ "a": GroupSpec( attributes={"foo": 10}, - members={ - "a": ArraySpec.from_array( - np.arange(5), attributes={"foo": 100} - ) - }, + members={"a": ArraySpec.from_array(np.arange(5), attributes={"foo": 100})}, ), "b": ArraySpec.from_array(np.arange(2), attributes={"foo": 3}), }, @@ -560,12 +546,8 @@ def test_group_like() -> None: group = GroupSpec.from_flat(tree) assert group.like(group) assert not group.like(group.model_copy(update={"attributes": None})) - assert group.like( - group.model_copy(update={"attributes": None}), exclude={"attributes"} - ) - assert group.like( - group.model_copy(update={"attributes": None}), include={"members"} - ) + assert group.like(group.model_copy(update={"attributes": None}), exclude={"attributes"}) + assert group.like(group.model_copy(update={"attributes": None}), include={"members"}) # todo: parametrize @@ -575,9 +557,7 @@ def test_from_zarr_depth(): "/1": GroupSpec(members=None, attributes={"level": 1, "type": "group"}), "/1/2": GroupSpec(members=None, attributes={"level": 2, "type": "group"}), "/1/2/1": GroupSpec(members=None, attributes={"level": 3, "type": "group"}), - "/1/2/2": ArraySpec.from_array( - np.arange(20), attributes={"level": 3, "type": "array"} - ), + "/1/2/2": ArraySpec.from_array(np.arange(20), attributes={"level": 3, "type": "array"}), } store = zarr.MemoryStore() diff --git a/tests/test_v3.py b/tests/test_pydantic_zarr/test_v3.py similarity index 71% rename from tests/test_v3.py rename to tests/test_pydantic_zarr/test_v3.py index 437b96e..a5b4e03 100644 --- a/tests/test_v3.py +++ b/tests/test_pydantic_zarr/test_v3.py @@ -11,12 +11,8 @@ def test_serialize_deserialize(): shape=[1000, 1000], dimension_names=["rows", "columns"], data_type="float64", - chunk_grid=NamedConfig( - name="regular", configuration={"chunk_shape": [1000, 100]} - ), - chunk_key_encoding=NamedConfig( - name="default", configuration={"separator": "/"} - ), + chunk_grid=NamedConfig(name="regular", configuration={"chunk_shape": [1000, 100]}), + chunk_key_encoding=NamedConfig(name="default", configuration={"separator": "/"}), codecs=[NamedConfig(name="GZip", configuration={"level": 1})], fill_value="NaN", ) From 355b27a6a9972ee1d4068e2f5dd9bff30cdb3286 Mon Sep 17 00:00:00 2001 From: Davis Vann Bennett Date: Mon, 27 Jan 2025 11:16:19 +0100 Subject: [PATCH 2/6] fix gha --- .github/workflows/test.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 396f9a9..5dbb17f 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -56,11 +56,11 @@ jobs: pip install hatch - name: Set Up Hatch Env run: | - hatch env create test.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} - hatch env run -e test.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} list-env + hatch env create test.py${{ matrix.python-version }} + hatch env run -e test.py${{ matrix.python-version }} list-env - name: Run Tests run: | - hatch env run --env test.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} run-coverage + hatch env run --env test.py${{ matrix.python-version }} run-coverage - name: Upload coverage uses: codecov/codecov-action@v5 with: From e86456baf63722faa3dba1957fb770da893f62ae Mon Sep 17 00:00:00 2001 From: Davis Vann Bennett Date: Mon, 27 Jan 2025 11:17:15 +0100 Subject: [PATCH 3/6] simplify doctests --- .github/workflows/test.yml | 4 ---- 1 file changed, 4 deletions(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 5dbb17f..aed172f 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -83,10 +83,6 @@ jobs: run: | python -m pip install --upgrade pip pip install hatch - - name: Set Up Hatch Env - run: | - hatch env create doctest - hatch env run -e doctest list-env - name: Run Tests run: | hatch run docs:test From c75ca83bfe3e66b89e710e559fd8efe383723172 Mon Sep 17 00:00:00 2001 From: Davis Vann Bennett Date: Mon, 27 Jan 2025 11:18:26 +0100 Subject: [PATCH 4/6] remove list-env --- .github/workflows/test.yml | 4 ---- 1 file changed, 4 deletions(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index aed172f..4dd2ba7 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -54,10 +54,6 @@ jobs: run: | python -m pip install --upgrade pip pip install hatch - - name: Set Up Hatch Env - run: | - hatch env create test.py${{ matrix.python-version }} - hatch env run -e test.py${{ matrix.python-version }} list-env - name: Run Tests run: | hatch env run --env test.py${{ matrix.python-version }} run-coverage From f1d3e8b619606fedd763fed380b2bb1b888931d8 Mon Sep 17 00:00:00 2001 From: Davis Vann Bennett Date: Mon, 27 Jan 2025 11:29:42 +0100 Subject: [PATCH 5/6] fix test workflow --- .github/workflows/test.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 4dd2ba7..0382115 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -56,7 +56,7 @@ jobs: pip install hatch - name: Run Tests run: | - hatch env run --env test.py${{ matrix.python-version }} run-coverage + hatch run test.py${{ matrix.python-version }}:test-cov - name: Upload coverage uses: codecov/codecov-action@v5 with: From 92f7e76a1e5b1546f7f05af819c31f62117d9736 Mon Sep 17 00:00:00 2001 From: Davis Vann Bennett Date: Mon, 27 Jan 2025 11:32:36 +0100 Subject: [PATCH 6/6] dont use python 3.13 for doctests --- .github/workflows/test.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 0382115..f1f7245 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -73,7 +73,7 @@ jobs: - name: Set up Python uses: actions/setup-python@v5 with: - python-version: '3.13' + python-version: '3.11' cache: 'pip' - name: Install Hatch run: |