Incorrect indentation in one of the scripts.

[AngryMaciek]

My initial problem is that I want to run PAQR with Python3. While I was modifying the syntax in the scripts I noticed a piece of code that did not raise any error while running with Python2, hovewer with Python3 - it does: IndentationError: expected an indented block. I nailed the error down: please take a look at the script deNovo-used-sites-and-usage-inference.single_distal_included.py, lines 1650:1678 in this repository. Tabs are mixed with spaces and I cannot disentangle how the proper indentation should look like.
I have been trying and guessing a few options (with an input that I know that runs through on Python2) but all of them resulted in another error downstream.

[fgypas]

Hi @koljaLanger

Can you please take a look on it. When I clone the repo indeed there is an indentation issue with this file.

Thank you in advance

Best
Foivos

[AngryMaciek]

In my case I have resolved the issue with a substitution: 1TAB -> 8SPACES. But I think you should still correct this repository and test run it.
Maciek

[koljaLanger]

Many thanks for the report!
I updated the script and uploaded a revised version.
Ralf