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Include Singularity support #9

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dominikburri opened this issue Dec 3, 2021 · 0 comments
Open

Include Singularity support #9

dominikburri opened this issue Dec 3, 2021 · 0 comments
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enhancement New feature or request

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@dominikburri
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Is your feature request related to a problem? Please describe.
Currently only Conda is supported, but Singularity would be good to have, especially on HPC environments.

Describe the solution you'd like
Include in each Snakemake rule an appropriate Singularity / Docker container

Describe alternatives you've considered
Alternatively, use one global Singularity / Docker container for all rules.
@dominikburri dominikburri added the enhancement New feature or request label Dec 3, 2021
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@dominikburri