From a4049b151f650dfe0b2cac98f62baa92933f3aa0 Mon Sep 17 00:00:00 2001
From: deliaBlue <iris.mepa13@gmail.com>
Date: Fri, 23 Feb 2024 18:17:27 +0100
Subject: [PATCH] revert: undo refactoring

---
 workflow/rules/pileup.smk | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/workflow/rules/pileup.smk b/workflow/rules/pileup.smk
index 00768c2..97654c3 100644
--- a/workflow/rules/pileup.smk
+++ b/workflow/rules/pileup.smk
@@ -139,7 +139,7 @@ rule create_per_library_ascii_pileups:
     params:
         cluster_log=CLUSTER_LOG / "pileups_{sample}.log",
         out_dir=lambda wildcards: expand(
-            PILEUP_DIR / "{sample}", sample=[wildcards.sample]
+            PILEUP_DIR / "{sample}", sample=pd.unique(samples_table.index.values)
         ),
         prefix="{sample}",
     log: