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verbose for stag check_input not enforced #25

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jakob-wirbel opened this issue Feb 17, 2021 · 0 comments
Open

verbose for stag check_input not enforced #25

jakob-wirbel opened this issue Feb 17, 2021 · 0 comments

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@jakob-wirbel
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When running

stag check_input -i fasta_file -x taxonomy_file -a hmm_file -i 1

it still prints in the standard out all the warnings (>10k lines) about genes having the same sequence but different taxonomy.

With

stag check_input -i fasta_file -x taxonomy_file -a hmm_file -i 1 -w warning_file

it works and a single line with warnings is displayed in the output.
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@jakob-wirbel