quantifying circRNA transcripts

[KateK]

Hi!

I have two questions:

1. There is no explenation what exacly mean column names in quant.sf file. Do you have such information?

2. When i try to count expected number of reads arising from specific transcripts using your approach there is problem that some rows (transcripts) are dubbled and expeted value for them differs. Can you help me with this issue?

Regards!
Katarzyna Kozłowska

[CarlosAlfonsoG]

Did you got an answer?

[likelet]

seem the author of this repo do not maintain their code and also not give feedback to the issues

[rob-p]

Hi @CarlosAlfonsoG & @likelet --- I cannot answer (2), but you can find a description of the meanings of the columns in quant.sf in the documentation for the salmon quantification tool.

[likelet]

hi @rob-p , did you encounter this error before? , I am not sure whether the dependencies were properly installed.

[info] Building 32-bit suffix array (length of generalized text is 0)
Building suffix array . . . FAILURE: return code from libdivsufsort() was -1