circos/circos.

[xfcypeng]

3-05-14 16:01:34 [INFO] run CMD: cd /media/ps/4T/Centromics/HapA/cent-output/hifi.circos && circos -conf ./circos.conf
Traceback (most recent call last):
File "/home/ps/anaconda3/envs/RepCent/lib/python3.8/shutil.py", line 791, in move
os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/media/ps/4T/Centromics/HapA/cent-output/hifi.circos/circos.svg' -> '/media/ps/4T/Centromics/HapA/cent-output/hifi.circos/circos.svg.bk'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/ps/anaconda3/envs/RepCent/bin/centromics", line 33, in
sys.exit(load_entry_point('Centromics==0.3', 'console_scripts', 'centromics')())
File "/home/ps/anaconda3/envs/RepCent/lib/python3.8/site-packages/Centromics-0.3-py3.8.egg/Centromics/pipe.py", line 272, in main
pipeline.run()
File "/home/ps/anaconda3/envs/RepCent/lib/python3.8/site-packages/Centromics-0.3-py3.8.egg/Centromics/pipe.py", line 133, in run
self.run_circos(tr_bed=tr_bed, tr_labels=tr_labels,
File "/home/ps/anaconda3/envs/RepCent/lib/python3.8/site-packages/Centromics-0.3-py3.8.egg/Centromics/pipe.py", line 153, in run_circos
Circos.centomics_plot(self.genome, wkdir, *args, **kargs)
File "/home/ps/anaconda3/envs/RepCent/lib/python3.8/site-packages/Centromics-0.3-py3.8.egg/Centromics/Circos.py", line 386, in centomics_plot
fmt_svg(svgfile)
File "/home/ps/anaconda3/envs/RepCent/lib/python3.8/site-packages/Centromics-0.3-py3.8.egg/Centromics/Circos.py", line 633, in fmt_svg
bksvgfile, svgfile = backup_file(svgfile)
File "/home/ps/anaconda3/envs/RepCent/lib/python3.8/site-packages/Centromics-0.3-py3.8.egg/Centromics/small_tools.py", line 288, in backup_file
shutil.move(input_file, input_file_bk)
File "/home/ps/anaconda3/envs/RepCent/lib/python3.8/shutil.py", line 805, in move
copy_function(src, real_dst)
File "/home/ps/anaconda3/envs/RepCent/lib/python3.8/shutil.py", line 435, in copy2
copyfile(src, dst, follow_symlinks=follow_symlinks)
File "/home/ps/anaconda3/envs/RepCent/lib/python3.8/shutil.py", line 264, in copyfile
with open(src, 'rb') as fsrc, open(dst, 'wb') as fdst:
FileNotFoundError: [Errno 2] No such file or directory: '/media/ps/4T/Centromics/HapA/cent-output/hifi.circos/circos.svg'

[zhangrengang]

Hi, it seems circos failed. Please post more log before the error.