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I have four different animals crossed (AxB) and (cxD) to give me ABCD mix. I know that the F2 has ABCD haplotypes and I wanted to assesses haplotype-specific gene expression. From the results below, how can one tell which gene is linked to what haplotype, because I only see "block_ID". Is there a way the above haplotypes can be rendered in the final result? instead of 1,2,3 etc, we have A, B, C, D etc to help know which gene is significantly expressed in in which haplotype.
I have four different animals crossed (AxB) and (cxD) to give me ABCD mix. I know that the F2 has ABCD haplotypes and I wanted to assesses haplotype-specific gene expression. From the results below, how can one tell which gene is linked to what haplotype, because I only see "block_ID". Is there a way the above haplotypes can be rendered in the final result? instead of 1,2,3 etc, we have A, B, C, D etc to help know which gene is significantly expressed in in which haplotype.
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