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Interpratation of the results #1

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Jokendo-collab opened this issue Sep 20, 2024 · 0 comments
Open

Interpratation of the results #1

Jokendo-collab opened this issue Sep 20, 2024 · 0 comments

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@Jokendo-collab
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I have four different animals crossed (AxB) and (cxD) to give me ABCD mix. I know that the F2 has ABCD haplotypes and I wanted to assesses haplotype-specific gene expression. From the results below, how can one tell which gene is linked to what haplotype, because I only see "block_ID". Is there a way the above haplotypes can be rendered in the final result? instead of 1,2,3 etc, we have A, B, C, D etc to help know which gene is significantly expressed in in which haplotype.

block_id predictors individuals        MR2         pval         qval              gene
1        3          3         373 0.08157302 7.766700e-07 1.320339e-05 ENSG00000230699.2
2        4          5         373 0.08340761 6.416704e-06 3.636132e-05 ENSG00000230699.2
3        5          6         373 0.06835397 2.382716e-04 1.012654e-03 ENSG00000230699.2
4        6          2         373 0.06714778 2.888405e-06 2.455145e-05 ENSG00000230699.2
5        7          1         373 0.02494721 2.311096e-03 6.548105e-03 ENSG00000230699.2
6        8          1         373 0.02208597 4.171539e-03 1.013088e-02 ENSG00000230699.2
7       10          2         373 0.03806141 8.082365e-04 2.748004e-03 ENSG00000230699.2
8       11          1         373 0.01480668 1.921155e-02 4.082455e-02 ENSG00000230699.2
9       14          3         373 0.03847154 2.433145e-03 4.136346e-02 ENSG00000187961.7
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