vignette.yml

on:
  push:
    branches:
      - "master"
  pull_request:
    branches:
      - "*"

name: vignette

jobs:
  vignette:
    defaults:
      run:
        shell: bash -l {0}
    strategy:
      matrix:
        config:
          - { os: macos-latest }
    runs-on: ${{ matrix.config.os }}
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    steps:
      - uses: actions/checkout@v3

      - uses: r-lib/actions/setup-r@v2
        id: install-r

      - uses: r-lib/actions/setup-pandoc@v2

      - id: bioc
        name: Check bioc version
        run: |
          echo "##[set-output name=mainbiocversion;]$(Rscript -e 'cat(unlist(tools:::.BioC_version_associated_with_R_version()))' | awk '{print $1}')"
          echo "##[set-output name=subbiocversion;]$(Rscript -e 'cat(unlist(tools:::.BioC_version_associated_with_R_version()))' | awk '{print $2}')"
          echo "##[set-output name=biocversion;]$(Rscript -e 'cat(as.character(tools:::.BioC_version_associated_with_R_version()))' | awk '{print $1}')"
        shell: bash -l {0}

      - name: Install pak and query dependencies
        run: |
          install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")
          saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds")
        shell: Rscript {0}

      - name: Cache R packages
        uses: actions/cache@v2
        with:
          path: |
            ${{ env.R_LIBS_USER }}
            !${{ env.R_LIBS_USER }}/pak
          key: ${{ env.cache-version }}-${{ matrix.config.os }}-biocversion-RELEASE_${{ steps.bioc.outputs.mainbiocversion}}_${{ steps.bioc.outputs.subbiocversion}}-r-${{ matrix.config.r-version}}-${{ hashFiles('.github/depends.Rds') }}
          restore-keys: ${{ env.cache-version }}-${{ matrix.config.os }}-biocversion-RELEASE_${{ steps.bioc.outputs.mainbiocversion}}_${{ steps.bioc.outputs.subbiocversion}}-r-${{ matrix.config.r-version}}-

      - name: Install dependencies
        run: |
          pak::local_install_dev_deps(upgrade = TRUE, dependencies = c("all", "Config/Needs/website"))
          pak::pkg_install("pkgdown")
        shell: Rscript {0}

      - name: Install package
        run: R CMD INSTALL .

      - name: Build and deploy pkgdown site
        run: |
          git config --local user.name "$GITHUB_ACTOR"
          git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com"
          Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'
        shell: bash -l {0}