diff --git a/articles/vignette.html b/articles/vignette.html index f8bccc0..30c471d 100644 --- a/articles/vignette.html +++ b/articles/vignette.html @@ -73,7 +73,7 @@

Plotting CellPhoneDB results

-

2023-10-31

+

2023-11-01

diff --git a/articles/vignette_files/figure-html/unnamed-chunk-16-1.png b/articles/vignette_files/figure-html/unnamed-chunk-16-1.png index 3f6b26b..06ebbe7 100644 Binary files a/articles/vignette_files/figure-html/unnamed-chunk-16-1.png and b/articles/vignette_files/figure-html/unnamed-chunk-16-1.png differ diff --git a/articles/vignette_files/figure-html/unnamed-chunk-21-1.png b/articles/vignette_files/figure-html/unnamed-chunk-21-1.png index 8ede39c..1669b99 100644 Binary files a/articles/vignette_files/figure-html/unnamed-chunk-21-1.png and b/articles/vignette_files/figure-html/unnamed-chunk-21-1.png differ diff --git a/articles/vignette_files/figure-html/unnamed-chunk-24-1.png b/articles/vignette_files/figure-html/unnamed-chunk-24-1.png index b6d9b69..e1a0420 100644 Binary files a/articles/vignette_files/figure-html/unnamed-chunk-24-1.png and b/articles/vignette_files/figure-html/unnamed-chunk-24-1.png differ diff --git a/articles/vignette_v5.html b/articles/vignette_v5.html index 66f2568..74c980e 100644 --- a/articles/vignette_v5.html +++ b/articles/vignette_v5.html @@ -73,7 +73,7 @@

New CellPhoneDB v5 results

-

2023-10-31

+

2023-11-01

diff --git a/pkgdown.yml b/pkgdown.yml index 994f15b..b7c12cf 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -4,5 +4,5 @@ pkgdown_sha: ~ articles: vignette: vignette.html vignette_v5: vignette_v5.html -last_built: 2023-10-31T23:50Z +last_built: 2023-11-01T06:58Z diff --git a/reference/plot_cpdb.html b/reference/plot_cpdb.html index a7a4c2c..c2bd87a 100644 --- a/reference/plot_cpdb.html +++ b/reference/plot_cpdb.html @@ -226,9 +226,9 @@

Examples

# \donttest{
 data(kidneyimmune)
 data(cpdb_output)
-plot_cpdb(kidneyimmune, "B cell", "CD4T cell", "celltype", means, pvals, splitby_key = "Experiment", genes = c("CXCL13", "CD274", "CXCR5"))
+plot_cpdb(kidneyimmune, 'B cell', 'CD4T cell', 'celltype', means, pvals, splitby_key = 'Experiment', genes = c('CXCL13', 'CD274', 'CXCR5'))
 #> Error in plot_cpdb(kidneyimmune, "B cell", "CD4T cell", "celltype", means,     pvals, splitby_key = "Experiment", genes = c("CXCL13", "CD274",         "CXCR5")): No significant genes found and plotting will not proceed.
-plot_cpdb(kidneyimmune, "B cell", "CD4T cell", "celltype", means, pvals, splitby_key = "Experiment", gene_family = "chemokines")
+plot_cpdb(kidneyimmune, 'B cell', 'CD4T cell', 'celltype', means, pvals, splitby_key = 'Experiment', gene_family = 'chemokines')
 
 # }