Merge pull request #587 from 4dn-dcic/ajs_250107_rm_restricted_from_c…

…heck_srch

Remove restricted status from 2 checks

CHANGELOG.rst

@@ -7,6 +7,16 @@ foursight
 Change Log
 ----------
 
+4.9.9
+=====
+
+`PR 587: Remove restricted status from search query <https://github.com/4dn-dcic/foursight/pull/587>`_
+
+* Remove the 'restricted' status from the search query in the fastq_first_line check
+* Remove the 'restricted' status from the search query in the bamQC check (and add pre-release)
+* will allow files that have not been uploaded to be set to 'restricted' status and not trigger runs of these checks
+
+
 4.9.8
 =====
 

chalicelib_fourfront/checks/wfr_checks.py

@@ -1977,7 +1977,7 @@ def bamqc_status(connection, **kwargs):
     if skip:
         return check
     # Build the query
-    default_stati = 'released&status=uploaded&status=released+to+project&status=restricted'
+    default_stati = 'released&status=uploaded&status=released+to+project&status=pre-release'
     # find bam files produced bt the Hi-C Post Alignment Processing wfr
     wfr_outputs = "&workflow_run_outputs.workflow.title=Hi-C+Post-alignment+Processing+0.2.6"
     stati = 'status=' + (kwargs.get('status') or default_stati)
@@ -2069,7 +2069,7 @@ def fastq_first_line_status(connection, **kwargs):
         return check
 
     query = ('/search/?status=uploaded&status=pre-release&status=released+to+project&status=released'
-             '&type=FileFastq&file_format.file_format=fastq&file_first_line=No value&status=restricted')
+             '&type=FileFastq&file_format.file_format=fastq&file_first_line=No value')
 
     # The search
     print('About to query ES for files')

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "foursight"
-version = "4.9.8"
+version = "4.9.9"
 description = "Serverless Chalice Application for Monitoring"
 authors = ["4DN-DCIC Team <[email protected]>"]
 license = "MIT"