seqdb-api

Description (en)

Molecular Analysis services - Supported Workflows

• Sanger
• NGS - Whole Genome
• Metagenomics
• Generic workflow

seqdb-api is an implementation of the Sequence Module for the DINA project.

Description (fr)

Services d'analyse moléculaire - Flux de travail supportés

• Sanger
• NGS - Génome entier
• Métagénomique
• Flux de travail générique

seqdb-api est une implémentation du module de sequence pour le DINA project (anglais seulement).

Required

• Java 21
• Maven 3.8+
• PostgreSQL 10
• Docker

Run

mvn clean spring-boot:run

More information on Running the application.

Documentation

See DINA Developer Guide

To Run

For testing purpose a Docker Compose example file is available in the local folder.

Create a new docker-compose.yml file and .env file from the example file in the local directory:

cp local/docker-compose.yml.example docker-compose.yml
cp local/*.env .

Start the app (default port is 8084):

docker-compose up

Once the services have started you can access the endpoints at http://localhost:8084/api/

Cleanup:

docker-compose down

Automated tests are run using an embedded Docker container.