Merge pull request #66 from ACCESS-NRI/esmvaltool

Add ESMValTool environment

environments/esmvaltool/build_inner.sh

@@ -0,0 +1,8 @@
+### Custom install inner to build jupyter lab extensions
+
+set +u
+eval "$( ${MAMBA} shell hook --shell bash)"
+micromamba activate "${CONDA_INSTALLATION_PATH}/envs/${FULLENV}"
+set -u
+
+jupyter lab build

environments/esmvaltool/config.sh

@@ -0,0 +1,23 @@
+### config.sh MUST provide the following:
+### $FULLENV
+###
+### Arrays used by the build system (optional, can be empty)
+### rpms_to_remove
+### replace_from_apps
+### outside_commands_to_include
+### outside_files_to_copy
+
+
+### Optional config for custom deploy script
+export VERSION_TO_MODIFY=0.1
+export STABLE_VERSION=0.1
+export UNSTABLE_VERSION=0.2
+
+### Version settings
+export ENVIRONMENT=esmvaltool
+export FULLENV="${ENVIRONMENT}-${VERSION_TO_MODIFY}"
+
+declare -a rpms_to_remove=( "openssh-clients" "openssh-server" "openssh" )
+declare -a replace_from_apps=( "openmpi/4.1.5" "ucx/1.14.0" )
+declare -a outside_commands_to_include=( "pbs_tmrsh" "ssh" )
+declare -a outside_files_to_copy=( "/g/data/hh5/public/apps/nci-intake-catalogue/catalogue_new.yaml" )

environments/esmvaltool/deploy.sh

@@ -0,0 +1,18 @@
+### Update stable/unstable if necessary
+CURRENT_STABLE=$( get_aliased_module "${MODULE_NAME}"/esmvaltool "${CONDA_MODULE_PATH}" )
+NEXT_STABLE="${ENVIRONMENT}-${STABLE_VERSION}"
+CURRENT_UNSTABLE=$( get_aliased_module "${MODULE_NAME}"/esmvaltool-unstable "${CONDA_MODULE_PATH}" )
+NEXT_UNSTABLE="${ENVIRONMENT}-${UNSTABLE_VERSION}"
+
+if ! [[ "${CURRENT_STABLE}" == "${MODULE_NAME}/${NEXT_STABLE}" ]]; then
+    echo "Updating stable environment to ${NEXT_STABLE}"
+    write_modulerc "${NEXT_STABLE}" "${NEXT_UNSTABLE}" "${ENVIRONMENT}" "${CONDA_MODULE_PATH}" "${MODULE_NAME}"
+    symlink_atomic_update "${CONDA_INSTALLATION_PATH}"/envs/"${ENVIRONMENT}" "${NEXT_STABLE}"
+    symlink_atomic_update "${CONDA_SCRIPT_PATH}"/"${ENVIRONMENT}".d "${NEXT_STABLE}".d
+fi
+if ! [[ "${CURRENT_UNSTABLE}" == "${MODULE_NAME}/${NEXT_UNSTABLE}" ]]; then
+    echo "Updating unstable environment to ${NEXT_UNSTABLE}"
+    write_modulerc "${NEXT_STABLE}" "${NEXT_UNSTABLE}" "${ENVIRONMENT}" "${CONDA_MODULE_PATH}" "${MODULE_NAME}"
+    symlink_atomic_update "${CONDA_INSTALLATION_PATH}"/envs/"${ENVIRONMENT}"-unstable "${NEXT_UNSTABLE}"
+    symlink_atomic_update "${CONDA_SCRIPT_PATH}"/"${ENVIRONMENT}"-unstable.d "${NEXT_UNSTABLE}".d
+fi