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Build new environment for ILAMB workflow
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rbeucher committed Jul 23, 2024
1 parent ad4bdb9 commit 5d03e4f
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11 changes: 6 additions & 5 deletions environments/access-med/config.sh
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### Optional config for custom deploy script
export VERSION_TO_MODIFY=0.7
export VERSION_TO_MODIFY=0.8
export STABLE_VERSION=0.3
export UNSTABLE_VERSION=0.7
export UNSTABLE_VERSION=0.8

### Version settings
export ENVIRONMENT=access-med
export ENVIRONMENT=esmvaltool
export FULLENV="${ENVIRONMENT}-${VERSION_TO_MODIFY}"

declare -a rpms_to_remove=( "openssh-clients" "openssh-server" "openssh" )
declare -a replace_from_apps=( "openmpi/4.1.5" "ucx/1.14.0" )
declare -a replace_from_apps=( "ucx/1.15.0" )
declare -a outside_commands_to_include=( "pbs_tmrsh" "ssh" )
declare -a outside_files_to_copy=( "/g/data/hh5/public/apps/nci-intake-catalogue/catalogue_new.yaml" )
declare -a outside_files_to_copy=( "/g/data/hh5/public/apps/nci-intake-catalogue/catalogue_new.yaml" "/g/data/hh5/public/apps/openmpi/4.1.6" )
declare -a replace_with_external=( "/g/data/hh5/public/apps/openmpi/4.1.6" )
3 changes: 2 additions & 1 deletion environments/access-med/environment.yml
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Expand Up @@ -7,7 +7,7 @@ variables:
dependencies:
- apscheduler
- fs
- python>=3.9
- python>=3.10
- libnetcdf>=4.7.4=mpi_openmpi* # pinned for solver stability
- pip
- pytest >=3.9,!=6.0.0rc1,!=6.0.0
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- coecms::ucx-py
- xgboost >1.6.1 # github.com/ESMValGroup/ESMValTool/issues/2779
- med-diagnostics==0.0.1 # pining for now
- cdms2
- access-med-tools
- pip:
- railroad-diagrams ### Unlisted dependency of pip and pyparsing
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