New Additional Resource page

Moved Additional Resources into its own page.
ACCLAB · Sep 9, 2023 · 3ca7a19 · 3ca7a19
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diff --git a/nbs/05_Additional_resources.ipynb b/nbs/05_Additional_resources.ipynb
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+   "source": [
+    "---\n",
+    "output-file: Additional.html\n",
+    "title: 05. Additional resources\n",
+    "\n",
+    "---"
+   ]
+  },
+  {
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+   "id": "4dc195ef",
+   "metadata": {},
+   "source": [
+    "## Additional resources and building your skills\n",
+    "\n",
+    "Try using the [estimationstats.com](https://www.estimationstats.com/#/) web app to analyze your own grouped data.\n",
+    "\n",
+    "Open and have a look at the sample multivariate\n",
+    "[data](https://docs.google.com/spreadsheets/d/1F0c5I_S9_NnLKPMQxJkEfzGfhzQeR26SgkiHSTFwKDE/edit?usp=sharing).\n",
+    "Go through the [introductory\n",
+    "notebook](https://drive.google.com/file/d/1m_l4k5ZaUc03hpvcfBd_Riy2nXYDpFXg/view?usp=sharing)\n",
+    "that demonstrates data analysis.\n",
+    "\n",
+    "We recommend the following texts to strengthen your data-analysis and\n",
+    "presentation skills. They can be dipped into over the coming months or\n",
+    "years, and used as references. Being familiar with some or all of this\n",
+    "material will help you write your first-author paper/s and doctoral\n",
+    "thesis.\n",
+    "\n",
+    "### *Key resources*\n",
+    "\n",
+    "-   Estimation: Our\n",
+    "    [estimationstats.com](https://www.estimationstats.com/#/background)\n",
+    "    site has introductory information on estimation and specific types\n",
+    "    of\n",
+    "    [analyses](https://www.estimationstats.com/#/user-guide/two-independent-groups)\n",
+    "    and [effect\n",
+    "    sizes](https://www.estimationstats.com/#/about-effect-sizes).\n",
+    "\n",
+    "-   Datavis: Claus Wilke’s free online\n",
+    "    [book](https://clauswilke.com/dataviz/index.html) is a great\n",
+    "    introduction to data visualization, and a style guide. It is written\n",
+    "    in R, which is the best language for statistics.\n",
+    "\n",
+    "-   Coding: There are many online resources to learn coding. Published\n",
+    "    in 2021, [A Data-Centric Introduction to\n",
+    "    Computing](https://dcic-world.org/) uses a Python-like teaching\n",
+    "    language ([Pyret](https://www.pyret.org/)) to introduce key concepts\n",
+    "    in computer science.\n",
+    "\n",
+    "### *Additional resources*\n",
+    "\n",
+    "#### *Some are free, some you will need to buy or borrow from the library.*\n",
+    "\n",
+    "-   Estimation: If you want to learn about estimation statistics in\n",
+    "    greater depth, there is Calin-Jageman and Cumming’s\n",
+    "    [textbook](http://thenewstatistics.com/itns/) that is well-written,\n",
+    "    funny, and clear. The authors also run a\n",
+    "    [blog](https://thenewstatistics.com/itns/).\n",
+    "\n",
+    "-   Estimation: Christoph Bernard’s account of the pioneering experience\n",
+    "    of a major journal (*eNeuro*) recommending estimation as standard:\n",
+    "    the [initial\n",
+    "    announcement](https://www.eneuro.org/content/6/4/ENEURO.0259-19.2019),\n",
+    "    [author\n",
+    "    feedback](https://blog.eneuro.org/2021/02/discussion-est-stats-author-feedback),\n",
+    "    and [after one\n",
+    "    year](https://www.eneuro.org/content/8/2/ENEURO.0091-21.2021).\n",
+    "\n",
+    "-   Coding: The paid coding tutorial [Learn Python The Hard\n",
+    "    Way](https://learncodethehardway.org/python/) has a good reputation,\n",
+    "    but there are also many free options (see\n",
+    "    [DCIC](https://dcic-world.org/) above) with great reviews.\n",
+    "\n",
+    "-   Coding: It will help to learn to use your computer’s\n",
+    "    [Unix-style](https://youtu.be/tc4ROCJYbm0) command-line\n",
+    "    [shell](https://en.wikipedia.org/wiki/Unix_shell). This interface\n",
+    "    will allow you to use package managers like\n",
+    "    [conda](https://docs.conda.io/en/latest/) and\n",
+    "    [homebrew](https://brew.sh/), version-control tools like\n",
+    "    [git](https://git-scm.com/), and other important tools. There are\n",
+    "    many [books](https://www.linuxcommand.org/index.php) about the\n",
+    "    shell, with only minor differences between MacOS,\n",
+    "    [Windows](https://www.howtogeek.com/249966/how-to-install-and-use-the-linux-bash-shell-on-windows-10/),\n",
+    "    and Linux.\n",
+    "\n",
+    "-   Datavis: A brief guide to oral–visual data presentations\n",
+    "    ([talks](http://www.howtogiveatalk.com/)).\n",
+    "\n",
+    "-   Datavis: A reader-funded textbook on\n",
+    "    [typography](http://practicaltypography.com/presentations.html),\n",
+    "    including for slides. Since so much communication relies on text,\n",
+    "    typography is an important part of the data interface.\n",
+    "\n",
+    "-   Datavis: For historical perspectives, Edward Tufte’s\n",
+    "    [books](https://www.edwardtufte.com/tufte/) are classic texts to\n",
+    "    develop your design skills, and there is Friendly and Wainer’s\n",
+    "    [History of Data\n",
+    "    Visualization](https://friendly.github.io/HistDataVis/).\n",
+    "\n",
+    "-   As you progress, you will want to develop your skills in areas like\n",
+    "    bioinformatics, image processing, and/or machine learning. The iris\n",
+    "    dataset is widely used for training in multivariate data analysis,\n",
+    "    with many online tutorials.\n",
+    "    \n",
+    "-   The social reasons to learn programming also apply to programming for research."
+   ]
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diff --git a/nbs/index.ipynb b/nbs/index.ipynb
@@ -26,13 +26,9 @@
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-    "**Part of GMS6812 2022: Foundations of Precision Medicine hands-on workshops (PhD programme in Clinical and Translational Sciences)**\n",
-    "\n",
-    "__________________________\n",
-    "\n",
-    "9 am - 1 pm, Febuary 14, 2023\n",
-    "\n",
-    "Duke-NUS Medical School"
+    "**This material is used in Duke-NUS Medical School classes:**\n",
+    "* GMS6812 2022: Foundations of Precision Medicine hands-on workshops for the  PhD programme in Clinical and Translational Sciences.\n",
+    "* IBM Ethics and Personal and Professional Development Session"
    ]
   },
   {
@@ -47,13 +43,6 @@
     "\n",
     "If we have more time in class, you will also be introduced to our estimation statistics package [DABEST Introduction](dabest_introduction.html).\n"
    ]
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