Evaluate and plot symbolic expressions based on simulation results #5824
Workflow file for this run
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| name: Documentation Tests | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| - master | |
| pull_request: | |
| branches: | |
| - develop | |
| - master | |
| merge_group: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '48 4 * * *' | |
| jobs: | |
| doxygen: | |
| name: Test Doxygen | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v3 | |
| - run: git fetch --prune --unshallow | |
| - name: apt | |
| run: | | |
| sudo apt-get update \ | |
| && sudo apt-get install -y \ | |
| bison \ | |
| ragel \ | |
| graphviz \ | |
| texlive-latex-extra | |
| - name: Build doxygen | |
| run: | | |
| sudo scripts/downloadAndBuildDoxygen.sh | |
| - name: Run doxygen | |
| run: | | |
| scripts/run-doxygen.sh | |
| sphinx: | |
| name: Test Sphinx | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| python-version: [ "3.10" ] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v3 | |
| - run: git fetch --prune --unshallow | |
| - run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV | |
| - run: echo "SWIG=${AMICI_DIR}/ThirdParty/swig-4.1.1/install/bin/swig" >> $GITHUB_ENV | |
| - name: Build doxygen | |
| run: | | |
| sudo scripts/downloadAndBuildDoxygen.sh | |
| # install amici dependencies | |
| - name: apt | |
| run: | | |
| sudo apt-get update \ | |
| && sudo apt-get install -y \ | |
| g++ \ | |
| libatlas-base-dev \ | |
| libboost-serialization-dev \ | |
| pandoc \ | |
| python3-venv \ | |
| - name: Build swig | |
| run: | | |
| sudo scripts/downloadAndBuildSwig.sh | |
| - name: sphinx | |
| run: | | |
| scripts/run-sphinx.sh |