Python Tests #1562
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| name: Python Tests | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '48 4 * * *' | |
| jobs: | |
| build: | |
| name: Python Version Matrix | |
| runs-on: ubuntu-22.04 | |
| continue-on-error: ${{ matrix.experimental }} | |
| env: | |
| AMICI_SKIP_CMAKE_TESTS: "TRUE" | |
| AMICI_PARALLEL_COMPILE: "" | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11'] | |
| experimental: [false] | |
| steps: | |
| - run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV | |
| - run: echo "BNGPATH=${AMICI_DIR}/ThirdParty/BioNetGen-2.7.0" >> $GITHUB_ENV | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 20 | |
| # install dependencies | |
| - name: apt | |
| run: | | |
| sudo apt-get update \ | |
| && sudo apt-get install -y \ | |
| swig \ | |
| libatlas-base-dev \ | |
| libhdf5-serial-dev \ | |
| libboost-math-dev | |
| # install AMICI | |
| - name: Build BNGL | |
| run: | | |
| scripts/buildBNGL.sh | |
| - name: Install python package | |
| run: | | |
| scripts/installAmiciSource.sh | |
| - name: Python tests | |
| run: | | |
| source build/venv/bin/activate \ | |
| && pip3 install git+https://github.com/pysb/pysb \ | |
| && python3 -m pytest --ignore-glob=*petab* \ | |
| --ignore-glob=*test_splines.py ${AMICI_DIR}/python/tests |