AMICI v0.26.0 #52
Workflow file for this run
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| name: Deploy | |
| on: | |
| release: | |
| types: | |
| - published | |
| jobs: | |
| pypi: | |
| name: Deploy PyPI | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| python-version: ["3.11"] | |
| environment: | |
| name: pypi | |
| url: https://pypi.org/p/amici | |
| permissions: | |
| id-token: write | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 20 | |
| - name: Set up SWIG | |
| uses: ./.github/actions/setup-swig | |
| - run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV | |
| - name: Remove direct dependencies from setup.cfg | |
| # Remove any "git+https"-based dependencies that are not supported | |
| # by PyPI and are only required for testing. | |
| run: sed -i '/git+https/d' python/sdist/pyproject.toml | |
| - name: sdist | |
| run: scripts/buildSdist.sh | |
| - name: Publish a Python distribution to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| packages-dir: python/sdist/dist | |
| bioSimulatorsUpdateCliAndDockerImage: | |
| name: Release to BioSimulators | |
| needs: pypi | |
| runs-on: ubuntu-22.04 | |
| env: | |
| # Owner/repository-id for the GitHub repository for the downstream command-line interface and Docker image | |
| DOWNSTREAM_REPOSITORY: biosimulators/Biosimulators_AMICI | |
| # Username/token to use the GitHub API to trigger an action on the GitHub repository for the downstream | |
| # command-line interface and Docker image. Tokens can be generated at https://github.com/settings/tokens. | |
| # The token should have the scope `repo` | |
| GH_ISSUE_USERNAME: ${{ secrets.BIOSIMULATORS_USERNAME }} | |
| GH_ISSUE_TOKEN: ${{ secrets.BIOSIMULATORS_TOKEN }} | |
| steps: | |
| - name: Trigger GitHub action that will build and release the downstream command-line interface and Docker image | |
| run: | | |
| PACKAGE_VERSION="${GITHUB_REF/refs\/tags\/v/}" | |
| WORKFLOW_FILE=ci.yml | |
| curl \ | |
| -X POST \ | |
| -u ${GH_ISSUE_USERNAME}:${GH_ISSUE_TOKEN} \ | |
| -H "Accept: application/vnd.github.v3+json" \ | |
| https://api.github.com/repos/${DOWNSTREAM_REPOSITORY}/actions/workflows/${WORKFLOW_FILE}/dispatches \ | |
| -d "{\"ref\": \"dev\", \"inputs\": {\"simulatorVersion\": \"${PACKAGE_VERSION}\", \"simulatorVersionLatest\": \"true\"}}" | |
| dockerhub: | |
| name: Release to Docker Hub | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - uses: actions/checkout@v4 | |
| - run: git archive -o container/amici.tar.gz --format=tar.gz HEAD | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Publish to Registry | |
| uses: elgohr/Publish-Docker-Github-Action@v5 | |
| with: | |
| name: dweindl/amici | |
| username: ${{ secrets.DOCKER_USERNAME }} | |
| password: ${{ secrets.DOCKER_PASSWORD }} | |
| workdir: container/ | |
| dockerfile: Dockerfile | |
| tag_semver: true | |
| platforms: linux/amd64,linux/arm64 |