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Doc: show plotting measurements
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It seems, the documentation didn't demonstrate how to plot measurements together with the model outputs yet.
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dweindl committed Oct 2, 2024
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14 changes: 14 additions & 0 deletions python/examples/example_steadystate/ExampleSteadystate.ipynb
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Expand Up @@ -985,6 +985,20 @@
"print(\"Log-likelihood %f\" % rdata[\"llh\"])"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": "The provided measurements can be visualized together with the simulation results by passing the `Expdata` to `amici.plotting.plot_observable_trajectories`:"
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"amici.plotting.plot_observable_trajectories(rdata, edata=edata)"
]
},
{
"cell_type": "markdown",
"metadata": {},
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