Code

Adjoint event#1539

Code

Draft

paulstapor wants to merge 79 commits intodevelopAMICI-dev/AMICI:developfrom adjoint_eventAMICI-dev/AMICI:adjoint_eventCopy head branch name to clipboard

+398-157

Commits

Commits on Jun 16, 2021

• add model specific adjoint event update function signatures

  paulstapor

  committed
  2d2b51f

Commits on Jun 18, 2021

• add symbolic computations for adjoit updates at heavisides

  paulstapor

  committed
  3997c70

• adding interface to using model specific implementations of deltaxB and deltaqB

  paulstapor

  committed
  9caa9e5

Commits on Jul 5, 2021

• adjoint heavisides are working now

  paulstapor

  committed
  2b9c778

Commits on Jul 12, 2021

• heaviside functions working, events only for not state-dependent triggers

  paulstapor

  committed
  649c999

Commits on Jul 25, 2021

• not too complex events work in backward mode. Lets try to tackle the complex ones

  paulstapor

  committed
  6b4713c

Commits on Jul 27, 2021

• functionality implemented, jst need to clean up

  paulstapor

  committed
  2b78398

Commits on Aug 5, 2021

• added tests

  paulstapor

  committed
  33761ab

• tighten tolerances for adjoints

  paulstapor

  committed
  73fefb2

• Merge branch 'develop' into adjoint_event

  paulstapor

  authored
  94eed87

Commits on Oct 9, 2021

• Merge branch 'develop' into adjoint_event

  dweindl

  authored
  1372cce

Commits on Oct 17, 2021

• Merge branch 'develop' into adjoint_event

  dweindl

  authored
  c7c57bb

• Update changed signature in matlab code generation

  dweindl

  committed
  1c1b4de

• Update changed signature in test model

  dweindl

  committed
  9144dc4

• Regenerate matlab models

  dweindl

  committed
  2534ce4

• Fix doc

  dweindl

  committed
  ed22629

• Remove unused Model::updateHeavisideB_eventwise

  dweindl

  committed
  ccc9d03

• swig ignore Model::fxBdot

  dweindl

  committed
  83c229c

• remove dead code

  dweindl

  committed
  cf0c6b2

Commits on Oct 18, 2021

• cleanup

  dweindl

  committed
  672975c

• sphinx?

  dweindl

  committed
  ee0b105

• swig ignore fxbdot

  dweindl

  committed
  7ffa5a9

Commits on Oct 20, 2021

• Merge branch 'develop' into adjoint_event

  

  Fabian Fröhlich

  authored
  954615c

Commits on Nov 5, 2021

• Merge branch 'develop' into adjoint_event

  dweindl

  authored
  44b20a4

Commits on Nov 18, 2021

• Merge branch 'develop' into adjoint_event

  dweindl

  authored
  7ea097f

Commits on Dec 10, 2021

• Merge branch 'develop' into adjoint_event

  dweindl

  committed
  41119d6

• Merge branch 'develop' into adjoint_event

  dweindl

  committed
  b39c7bb

• remove empty tests/estimate_Leonhardt_NBM2014.py

  dweindl

  committed
  6b1039a

Commits on Dec 11, 2021

• Merge branch 'develop' into adjoint_event

  dweindl

  authored
  822a7d0

Commits on Jan 10, 2022

• Merge branch 'develop' into adjoint_event

  dweindl

  authored
  e401eb4

Commits on Feb 8, 2022

• Merge branch 'develop' into adjoint_event

  dweindl

  authored
  e545514

Commits on Feb 10, 2022

• last status of work in progress

  paulstapor

  committed
  b27bdf1

• Merge branch 'adjoint_event' of github.com:ICB-DCM/AMICI into adjoint_event

  paulstapor

  committed
  3d0d582

Commits on Jan 31, 2023

• Merge remote-tracking branch 'origin/develop' into adjoint_event

  dweindl

  committed
  f77b601

• fixup merge

  dweindl

  committed
  a5523b1

• fixup

  dweindl

  committed
  8661ed5

• Merge branch 'develop' into adjoint_event

  dweindl

  committed
  ff9d3d4

• Merge remote-tracking branch 'origin/develop' into adjoint_event

  dweindl

  committed
  d5e421e

• verbose

  dweindl

  committed
  e6a8014

• fix windows?

  dweindl

  committed
  ccb0677

Commits on Feb 1, 2023

• Merge branch 'develop' into adjoint_event

  dweindl

  authored
  54e5465

Commits on Feb 11, 2023

• fdeltaxB tcl

  dweindl

  committed
  489e75a

• fixup

  dweindl

  committed
  fdcf30a

• regenerate models

  dweindl

  committed
  59a5e44

• fix sign - fixes test_models[nested_events]

  dweindl

  committed
  5d589ff

• Cleanup

  dweindl

  committed
  3ac9467

• check_trajectories_with_adjoint_sensitivities

  dweindl

  committed
  cf2ee13

• cleanup

  dweindl

  committed
  346729a

• ..

  dweindl

  committed
  e7b99ce

Commits on Feb 12, 2023

• cleanup

  dweindl

  committed
  8089d78

• cleanup

  dweindl

  committed
  c06b487

Commits on Feb 13, 2023

• Merge branch 'develop' into adjoint_event

  dweindl

  authored
  9ea1aa5

Commits on Feb 14, 2023

• Fix hdf5.cpp

  stephanmg

  committed
  7740dbf

Commits on May 11, 2023

• Merge branch 'develop' into adjoint_event

  dweindl

  committed
  707a9c0

• Merge branch 'develop' into adjoint_event

  dweindl

  authored
  9ac2e77

Commits on May 16, 2023

• Merge branch 'develop' into adjoint_event

  dweindl

  committed
  f2e61b1

• ..

  dweindl

  committed
  655810c

• error messages

  dweindl

  committed
  365b724

• eps = 1e-5

  dweindl

  committed
  af1a2be

• Merge remote-tracking branch 'origin/develop' into adjoint_event

  dweindl

  committed
  e4ac2e6

Commits on May 17, 2023

• cleanup

  dweindl

  committed
  18e6e65

• ..

  dweindl

  committed
  2244ba1

• remove dbg?

  dweindl

  committed
  2ca11c2

• unrelated

  dweindl

  committed
  8ea5bbb

• Add test for events with state-dependent ddeltaxd{t,p,x} (#2092)

  Show description for a5b515e
  dweindl

  committed
  a5b515e

• Revert "remove dbg?"

  Show description for ec1903b
  dweindl

  committed
  ec1903b

• fix minus

  dweindl

  committed
  3f4bbb3

Commits on May 24, 2023

• Merge branch 'develop' into adjoint_event

  dweindl

  authored
  bb24068

Commits on May 25, 2023

• Merge branch 'develop' into adjoint_event

  dweindl

  authored
  020b2b1

Commits on Dec 12, 2023

• Merge branch 'develop' into adjoint_event

  dweindl

  authored
  0dfd25e

• black

  dweindl

  committed
  34fde49

Commits on Dec 14, 2023

• Merge branch 'develop' into adjoint_event

  dweindl

  authored
  8ea8bdf

Commits on Jan 16, 2024

• Merge branch 'develop' into adjoint_event

  dweindl

  authored
  7e32da0

Commits on Oct 9, 2024

• Merge branch 'develop' into adjoint_event

  Show description for 114319f
  dweindl

  committed
  114319f

• simplify

  dweindl

  committed
  a8aea88

• Merge branch 'develop' into adjoint_event

  dweindl

  committed
  f66c6a5

• simplify, stricter tolerances, dbg output

  dweindl

  committed
  8559b8e

• ..

  dweindl

  committed
  20db8dc

Commits on Oct 10, 2024

• Benchmark problems look good

  dweindl

  committed
  0cede49