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Remove setuptools<64 restriction #2180

Merged
merged 4 commits into from
Nov 3, 2023
Merged

Remove setuptools<64 restriction #2180

merged 4 commits into from
Nov 3, 2023

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dweindl
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@dweindl dweindl commented Oct 23, 2023

We had to require setuptools<64 because it change its temporary build directory from a known path to a randomly named temporary directory. However, setuptools<64 doesn't work with for Python3.12 (#2179). Therefore, this adds an option to change the setuptools temporary build directory, so we have those temp files in a known path for coverage analysis. Not meant to be used by users.

@dweindl dweindl requested a review from a team as a code owner October 23, 2023 08:58
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codecov bot commented Oct 23, 2023

Codecov Report

Merging #2180 (ed7d95b) into develop (71295a5) will decrease coverage by 0.03%.
The diff coverage is 75.00%.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop    #2180      +/-   ##
===========================================
- Coverage    76.59%   76.57%   -0.03%     
===========================================
  Files           82       82              
  Lines        15000    15004       +4     
===========================================
  Hits         11489    11489              
- Misses        3511     3515       +4     
Flag Coverage Δ
cpp 73.47% <ø> (-0.04%) ⬇️
petab 53.84% <75.00%> (+0.01%) ⬆️
python 77.17% <75.00%> (-0.01%) ⬇️
sbmlsuite ?

Flags with carried forward coverage won't be shown. Click here to find out more.

Files Coverage Δ
python/sdist/amici/custom_commands.py 53.52% <75.00%> (+1.28%) ⬆️

... and 1 file with indirect coverage changes

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dweindl commented Oct 25, 2023

I can't recall why setuptools<64 was required

It seems it was due to a change in temporary build directories.

Previously:

2023-10-18T12:19:58.7269605Z     ------------------------------ amici ------------------------------
[...]
2023-10-18T12:19:59.6076474Z     -- CMAKE_BINARY_DIR: /home/runner/work/AMICI/AMICI/python/sdist/build/temp.linux-x86_64-cpython-39_amici
[...]
2023-10-18T14:30:11.1974396Z Capturing coverage data from /home/runner/work/AMICI/AMICI/build/CMakeFiles/amici.dir/src
[...]
2023-10-18T14:30:11.8773007Z Found 27 data files in /home/runner/work/AMICI/AMICI/build/CMakeFiles/amici.dir/src

Now:

2023-10-25T06:09:27.3351669Z   ------------------------------ amici ------------------------------
[...]
2023-10-25T06:09:28.0908333Z   -- CMAKE_BINARY_DIR: /tmp/tmpbis_04q_.build-temp_amici
[...]
2023-10-25T07:57:32.0670887Z Capturing coverage data from /home/runner/work/AMICI/AMICI/python/sdist/build/temp.linux-x86_64-cpython-39_amici/CMakeFiles/amici.dir/src
[...]
2023-10-25T07:57:32.1593636Z geninfo: ERROR: cannot read /home/runner/work/AMICI/AMICI/python/sdist/build/temp.linux-x86_64-cpython-39_amici/CMakeFiles/amici.dir/src!

Can we easily override the build directory? Needs further investigation...

cmake-build-extension bases its binary directory on the current working directory:
https://github.com/diegoferigo/cmake-build-extension/blob/b0425708e58360dd3c06e57acd81711161c70215/src/cmake_build_extension/build_extension.py#L198

-> check for pip/setuptools options

TODO: try https://stackoverflow.com/a/66163350

@dweindl dweindl removed the request for review from a team October 25, 2023 08:16
@dweindl dweindl marked this pull request as draft October 25, 2023 08:17
@dweindl dweindl marked this pull request as ready for review November 1, 2023 14:36
@dweindl dweindl mentioned this pull request Nov 1, 2023
2 tasks
@dweindl dweindl self-assigned this Nov 1, 2023
@dweindl dweindl requested a review from FFroehlich November 1, 2023 15:23
@dweindl dweindl merged commit 269910b into develop Nov 3, 2023
14 of 17 checks passed
@dweindl dweindl deleted the setuptools branch November 3, 2023 04:46
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2 participants