AMICI v0.11.28
New features:
- Added
Solver.setSteadyStateToleranceFactor
andSolver.setSteadyStateSensiToleranceFactor
to specify a steady state tolerance factor by @dilpath in #1758
NOTE: This also relaxes the default steady state (sensitivity) tolerances by a factor of 100. - Added support for
pathlib.Path
by @dweindl in #1769 - Allow specifying initial timepoint with
ExpData
by @dilpath in #1776
Performance:
- Speedup for models with conservation laws by @FFroehlich in #1765
- Improved efficiency of newton step convergence check by @FFroehlich in #1775
Fixes:
- Fixed deprecation warning for pandas.DataFrame.append in
rdatas_to_measurement_df
by @dweindl in #1770 - Fixed Rule-target handling in PEtab import by @dweindl in #1753
Removed functionality: