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Update AMReX and Microphysics to release 21.12
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@doreenfan
doreenfan committed Dec 1, 2021
1 parent db64490 commit ec6b553
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2 changes: 1 addition & 1 deletion external/Microphysics
Submodule Microphysics updated from d492bc to ddcc26
2 changes: 1 addition & 1 deletion external/amrex
Submodule amrex updated 87 files
+0 −3 .github/workflows/hip.yml
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+1 −1 Docs/sphinx_documentation/source/AmrCore.rst
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+0 −85 Docs/sphinx_documentation/source/GPU.rst
+2 −1 Docs/sphinx_documentation/source/index.rst
+3 −0 Src/AmrCore/AMReX_AmrCoreFwd.H
+8 −0 Src/AmrCore/AMReX_InterpFaceReg_1D_C.H
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+12 −0 Src/AmrCore/AMReX_InterpFaceReg_C.H
+85 −0 Src/AmrCore/AMReX_InterpFaceRegister.H
+201 −0 Src/AmrCore/AMReX_InterpFaceRegister.cpp
+4 −0 Src/AmrCore/CMakeLists.txt
+4 −0 Src/AmrCore/Make.package
+7 −0 Src/Base/AMReX.H
+6 −0 Src/Base/AMReX.cpp
+29 −15 Src/Base/AMReX_BoxArray.H
+2 −2 Src/Base/AMReX_FilCC_1D_C.H
+4 −4 Src/Base/AMReX_FilCC_2D_C.H
+6 −6 Src/Base/AMReX_FilCC_3D_C.H
+6 −6 Src/Base/AMReX_FilCC_C.cpp
+3 −0 Src/Base/AMReX_GpuAtomic.H
+1 −3 Src/Base/AMReX_ParmParse.H
+1 −39 Src/Base/AMReX_PlotFileUtil.H
+0 −782 Src/Base/AMReX_PlotFileUtil.cpp
+208 −2 Src/Base/AMReX_Scan.H
+6 −6 Src/Base/AMReX_filcc_mod.F90
+4 −1 Src/Base/Parser/AMReX_Parser_Y.H
+3 −0 Src/Base/Parser/AMReX_Parser_Y.cpp
+1 −0 Src/Base/Parser/amrex_parser.l
+103 −99 Src/Base/Parser/amrex_parser.lex.cpp
+4 −0 Src/CMakeLists.txt
+25 −6 Src/EB/AMReX_EB2_GeometryShop.H
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+56 −26 Src/EB/AMReX_EB_utils.cpp
+2 −2 Src/Extern/HDF5/AMReX_ParticleHDF5.H
+32 −0 Src/Extern/HDF5/AMReX_ParticleUtilHDF5.H
+259 −0 Src/Extern/HDF5/AMReX_ParticlesHDF5.H
+96 −0 Src/Extern/HDF5/AMReX_PlotFileUtilHDF5.H
+1,269 −0 Src/Extern/HDF5/AMReX_PlotFileUtilHDF5.cpp
+463 −0 Src/Extern/HDF5/AMReX_WriteBinaryParticleDataHDF5.H
+13 −0 Src/Extern/HDF5/CMakeLists.txt
+10 −0 Src/Extern/HDF5/Make.package
+3 −2 Src/LinearSolvers/MLMG/AMReX_MLEBNodeFDLaplacian.cpp
+1 −0 Src/LinearSolvers/MLMG/AMReX_MLNodeLaplacian.H
+1 −1 Src/LinearSolvers/MLMG/AMReX_MLNodeLaplacian.cpp
+52 −0 Src/LinearSolvers/MLMG/AMReX_MLNodeLaplacian_sten.cpp
+1 −1 Src/LinearSolvers/MLMG/AMReX_MLNodeLaplacian_sync.cpp
+13 −4 Src/Particle/AMReX_NeighborParticles.H
+66 −85 Src/Particle/AMReX_NeighborParticlesGPUImpl.H
+104 −2 Src/Particle/AMReX_NeighborParticlesI.H
+1 −1 Src/Particle/AMReX_Particle.H
+1 −34 Src/Particle/AMReX_ParticleUtil.cpp
+5 −261 Src/Particle/AMReX_Particles.H
+1 −461 Src/Particle/AMReX_WriteBinaryParticleData.H
+0 −1 Src/Particle/CMakeLists.txt
+1 −1 Src/Particle/Make.package
+19 −8 Tests/Amr/Advection_AmrLevel/CMakeLists.txt
+2 −0 Tests/Amr/Advection_AmrLevel/Exec/Make.Adv
+2 −3 Tests/Amr/Advection_AmrLevel/Exec/SingleVortex/Make.package
+6 −0 Tests/Amr/Advection_AmrLevel/Exec/SingleVortex/Prob.H
+47 −0 Tests/Amr/Advection_AmrLevel/Exec/SingleVortex/Prob.cpp
+0 −49 Tests/Amr/Advection_AmrLevel/Exec/SingleVortex/Prob.f90
+2 −3 Tests/Amr/Advection_AmrLevel/Exec/UniformVelocity/Make.package
+6 −0 Tests/Amr/Advection_AmrLevel/Exec/UniformVelocity/Prob.H
+47 −0 Tests/Amr/Advection_AmrLevel/Exec/UniformVelocity/Prob.cpp
+0 −49 Tests/Amr/Advection_AmrLevel/Exec/UniformVelocity/Prob.f90
+19 −5 Tests/Amr/Advection_AmrLevel/README
+0 −20 Tests/Amr/Advection_AmrLevel/Source/Adv_F.H
+5 −37 Tests/Amr/Advection_AmrLevel/Source/AmrLevelAdv.cpp
+1 −3 Tests/Amr/Advection_AmrLevel/Source/Make.package
+5 −3 Tests/HDF5Benchmark/GNUmakefile
+5 −0 Tests/HDF5Benchmark/inputs
+29 −9 Tests/HDF5Benchmark/main.cpp
+59 −0 Tests/SpackSmokeTest/CMakeLists.txt
+11 −0 Tools/CMake/AMReXConfig.cmake.in
+0 −6 Tools/CMake/AMReXSYCL.cmake
+3 −0 Tools/CMake/AMReXSetDefines.cmake
+27 −2 Tools/CMake/AMReXUtils.cmake
+1 −0 Tools/CMake/AMReX_Config.H.in
+31 −1 Tools/GNUMake/Make.defs
+19 −15 Tools/GNUMake/comps/dpcpp.mak
+2 −2 Tools/GNUMake/comps/hip.mak
+1 −0 Tools/GNUMake/packages/Make.hdf5
+7 −10 Tools/Plotfile/fcompare.cpp

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