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modified run_eleqtronex
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saurabh-s-sawant committed Aug 20, 2024
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8 changes: 4 additions & 4 deletions Docs/source/usage/run_eleqtronex.rst
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Expand Up @@ -95,16 +95,16 @@ Restart parameters
- ``restart = 1`` set while restarting the code.
- ``restart_step = <step_number>`` Replace ``<step_number>`` with step to be restarted.

Parameters specific to the NEGF module
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
NEGF module parameters
^^^^^^^^^^^^^^^^^^^^^^
- ``transport.NS_names = <NS1> <NS2>`` Optional parameter to define vector of string names for nanostructures. Folders with these names are created in the ``<plot.folder_name>/negf/`` folder.
- ``transport.NS_num = <number>`` If ``transport.NS_names`` is not specified then we need to set this parameter defining the number of nanostructures.
- ``transport.NS_type_default = CNT`` The default type of nanostructures. Here it is defined as CNT, referring to carbon nanotube.
- ``transport.NS_initial_deposit_value = <value>`` This is the initial charge deposited on the surface of the material while starting the simulation.
- ``transport.gate_terminal_type = <Type>`` ``<Type>`` can be EB, representing gate terminal defined as an embedded boundary, or ``Boundary``, representing gate terminal defined on the domain boundary.

Parameters specific to Electrostatics module
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Electrostatics module parameters
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
See AMReX documentation for MLMG parameters such as ``mlmg.set_verbose``, ``mlmg.max_order``, ``mlmg.absolute_tolerence``, and ``mlmg.relative_tolerance``.

For debugging, we typically need:
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