ENH: Airway segmentation

ANTsX · Mar 21, 2024 · 72d0647 · 72d0647
1 parent 65afdf7
commit 72d0647
Show file tree

Hide file tree

Showing 5 changed files with 65 additions and 6 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -44,7 +44,7 @@ Remotes:
     rstudio/keras
 SystemRequirements: Keras >= 2.0 (https://keras.io)
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.2.2
+RoxygenNote: 7.3.1
 VignetteBuilder: knitr
 BugReports: https://github.com/ANTsX/ANTsRNet/issues
 URL: https://github.com/ANTsX/ANTsRNet

diff --git a/NAMESPACE b/NAMESPACE
@@ -167,6 +167,7 @@ export(layer_spatial_transformer_3d)
 export(lesionSegmentation)
 export(linMatchIntensity)
 export(longitudinalCorticalThickness)
+export(lungAirwaySegmentation)
 export(lungExtraction)
 export(lungPulmonaryArterySegmentation)
 export(masked_mse_error)

diff --git a/R/getPretrainedNetwork.R b/R/getPretrainedNetwork.R
@@ -109,6 +109,7 @@ getPretrainedNetwork <- function(
               "protonLungMri",
               "protonLobes",
               "pulmonaryArteryWeights",
+              "pulmonaryAirwayWeights",
               "sixTissueOctantBrainSegmentation",
               "sixTissueOctantBrainSegmentationWithPriors1",
               "sixTissueOctantBrainSegmentationWithPriors2",
@@ -227,6 +228,7 @@ getPretrainedNetwork <- function(
     mriModalityClassification = "https://figshare.com/ndownloader/files/41691681",
     protonLungMri = "https://ndownloader.figshare.com/files/13606799",
     protonLobes = "https://figshare.com/ndownloader/files/30678455",
+    pulmonaryAirwayWeights = "https://figshare.com/ndownloader/files/45187168",
     pulmonaryArteryWeights = "https://figshare.com/ndownloader/files/42918565",
     sixTissueOctantBrainSegmentation = "https://ndownloader.figshare.com/files/23776025",
     sixTissueOctantBrainSegmentationWithPriors1 = "https://ndownloader.figshare.com/files/28159869",

diff --git a/man/getPretrainedNetwork.Rd b/man/getPretrainedNetwork.Rd
diff --git a/man/lungAirwaySegmentation.Rd b/man/lungAirwaySegmentation.Rd