fix: working append-match line

mutation-testing/scripts/README.md

@@ -7,13 +7,14 @@ cd mutation-testing/scripts
 sh append.sh
 # can see on git how the trails folder files were modified
 git status ./..
+
 ```
 
 ## steps to reproduce working version with different number lines:
 
 in trials/mutants-stable/caught.txt replace line number 23 with 109
 the append.sh won't work anymore
-the append-match.sh
+the append-match.sh works
 
 ```bash
 sh append-match.sh

mutation-testing/scripts/append-match.sh

@@ -1,17 +1,17 @@
 #!/bin/bash
 
 PR_FOLDER="./../trials/mutants.out.old"
-STABLE_FOLDER="./../mutants-stable"
+STABLE_FOLDER="./../trials/mutants-stable"
 FILES=("caught.txt" "missed.txt" "timeout.txt" "unviable.txt")
 
 echo "Starting script..."
 echo "PR Folder: $PR_FOLDER"
 echo "STABLE Folder: $STABLE_FOLDER"
 echo "Files to process: ${FILES[*]}"
 
-# Function to escape forward slashes
-escape_slashes() {
-    echo "$1" | sed 's_/_\\/_g'
+# Function to escape special characters for awk
+escape_for_awk() {
+    echo "$1" | sed -E 's/([][\/$*.^|])/\\&/g'
 }
 
 # Iterate over the specified files
@@ -27,24 +27,30 @@ for file in "${FILES[@]}"; do
         while IFS= read -r line; do
             echo "Reading line from PR file: $line"
 
-            # Extract the pattern without the line number and escape slashes
-            pattern=$(echo "$line" | sed -E 's/:[0-9]+:/::/' | escape_slashes)
-            echo "Extracted pattern: $pattern"
+            # Extract the core pattern without the line number and escape it for awk
+            core_pattern=$(echo "$line" | sed -E 's/^[^:]+:[0-9]+:(.+)/\1/')
+            escaped_pattern=$(escape_for_awk "$core_pattern")
+            echo "Extracted and escaped pattern: $escaped_pattern"
 
             # Iterate over each file in the STABLE folder
             for target_file in "${FILES[@]}"; do
                 target_path="$STABLE_FOLDER/$target_file"
                 echo "Checking against STABLE file: $target_path"
-                # Remove the matching line from the STABLE file, ignoring line numbers
-                # Adding '' for macOS compatibility
-                sed -i '' "/$pattern/d" "$target_path"
+
+                # Remove the line matching the pattern, ignoring line numbers
+                awk -v pat="$escaped_pattern" '$0 !~ pat' "$target_path" > temp_file && mv temp_file "$target_path"
             done
         done < "$pr_file"
     else
         echo "PR file $pr_file is empty or does not exist, skipping..."
     fi
 done
 
+# After processing all lines, append contents from PR_DIR to STABLE_DIR
+for file in "${FILES[@]}"; do
+    cat "$PR_FOLDER/$file" >> "$STABLE_FOLDER/$file"
+done
+
 # Echo the contents of the STABLE folder for verification
 echo "Updated contents of STABLE folder:"
 for file in "${FILES[@]}"; do

mutation-testing/scripts/append.sh

@@ -61,10 +61,7 @@ for file in "${FILES[@]}"; do
     done < "$PR_DIR/$file"
 done
 
-# # After processing all lines, append contents from PR_DIR to STABLE_DIR
+# After processing all lines, append contents from PR_DIR to STABLE_DIR
 for file in "${FILES[@]}"; do
     cat "$PR_DIR/$file" >> "$STABLE_DIR/$file"
 done
-
-
-

mutation-testing/trials/mutants-stable/caught.txt

@@ -1 +1,3 @@
-stx-genesis/src/lib.rs:23: replace <impl Iterator for LinePairReader>::count -> usize with 1
+stx-genesis/src/lib.rs:23: replace <impl Iterator for LinePairReader>::count -> usize with 43
+stx-genesis/src/lib.rs:109: replace <thi examepldas -> usize with 43
+stx-genesis/src/mmmms.rs:109: replace <thi examepldas -> usize with 43

mutation-testing/trials/mutants-stable/missed.txt

@@ -1 +1,3 @@
-stx-genesis/src/lib.rs:23: replace <impl Iterator for LinePairReader>::count -> usize with 0
+stx-genesis/src/lib.rs:23: replace <impl Iterator for LinePairReader>::count -> usize with 1
+stx-genesis/src/lib.rs:109: replace <impl Iterator for LinePairReader>::count -> usize with 0
+stx-genesis/src/lib.rs:109: replace <impl Iterator for LinePairReader>::count -> usize with 2

mutation-testing/trials/mutants-stable/unviable.txt

@@ -0,0 +1 @@
+stx-genesis/src/lib.rs:115: replace read_deflated_zonefiles -> Box<dyn Iterator<Item = GenesisZonefile>> with Box::new(Default::default())

mutation-testing/trials/mutants.out.old/missed.txt

@@ -1,2 +1,3 @@
 stx-genesis/src/lib.rs:23: replace <impl Iterator for LinePairReader>::count -> usize with 1
-stx-genesis/src/lib.rs:23: replace <impl Iterator for LinePairReader>::count -> usize with 0
+stx-genesis/src/lib.rs:109: replace <impl Iterator for LinePairReader>::count -> usize with 0
+stx-genesis/src/lib.rs:109: replace <impl Iterator for LinePairReader>::count -> usize with 2