first commit

.Rbuildignore

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+.git*

.github/workflows/tests.yml

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+name: CI
+
+on:
+  push:
+    branches:
+      - '**'
+    paths-ignore:
+      - '*.md'
+      - '*.MD'
+      - '*.ignore'
+      - LICENSE
+
+jobs:
+
+  circtools:
+
+    runs-on: ubuntu-latest
+
+    steps:
+
+      - uses: actions/checkout@v2
+
+      # Run everything via the Bioconductor docker image as it has almost all dependencies preinstalled
+      - name: devtools-check-docker
+        run: |
+          bioc_install='BiocManager::install(c("limma", "ggplot2"))'
+          dev_check='devtools::check("/circtools/")'
+          dev_doc='devtools::document("/circtools/")'
+          testthat='testthat::test_file("/circtools/tests/testthat/all_tests.R")'
+          docker run -v "$(pwd)":"/circtools/" bioconductor/bioconductor_docker:RELEASE_3_18 Rscript --vanilla -e "${bioc_install}; ${dev_check}; ${dev_doc}; ${testthat}"

.gitignore

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+*.RProj
+*.Rproj
+*.rproj
+..R*
+gitHeadInfo.gin
+R/.Rapp.history
+*.DS_*
+.Rproj.user
+.Rhistory
+qmethod.Rproj
+~*
+*.tar.gz

DESCRIPTION

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+Package: circtools
+Title: Functions related to analysis of circular data in R
+Version: 0.0.9
+Description: Functions related to analysis of circular data in R.
+Author: Alexander Bender [cut,cre]
+Maintainer: Alexander Bender <[email protected]>
+License: LGPL (>=2)
+Encoding: UTF-8
+Imports: 
+  limma, stats, methods
+Suggests:
+  ggplot2
+URL: https://github.com/atpoint/circtools
+BugReports: https://github.com/atpoint/circtools/issues
+RoxygenNote: 7.2.3

NAMESPACE

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+# Generated by roxygen2: do not edit by hand
+
+export(circular_density)
+export(circular_distance)
+export(circular_distance_reference)
+export(circular_intersect)
+export(make_data)
+export(make_design)
+export(rad2period)
+export(run_cosinor)
+importFrom(limma,eBayes)
+importFrom(limma,lmFit)
+importFrom(limma,topTable)
+importFrom(methods,is)
+importFrom(methods,new)
+importFrom(stats,density)
+importFrom(stats,model.matrix)
+importFrom(stats,rnorm)