Clean up requirements.txt file(s)

.github/workflows/pull-request-closed.yml

@@ -92,10 +92,10 @@ jobs:
 
         - name: "Create virtual Environment"
           run: python3 -m venv .venv
-        - name: "Install wheel and conan package"
+        - name: "Install -r requirements_dev.txt"
           run: |
             source .venv/bin/activate
-            pip3 install wheel conan cmake
+            pip3 install cmake -r requirements_dev.txt
 
         - name: "Build basilisk with OpNav"
           run: source .venv/bin/activate && python3 conanfile.py --opNav True --allOptPkg

.github/workflows/pull-request.yml

@@ -43,7 +43,7 @@ jobs:
         run: |
           python3 -m venv .venv
           source .venv/bin/activate
-          pip install wheel conan
+          pip install -r requirements_dev.txt
       - name: Build basilisk
         run: |
           source .venv/bin/activate
@@ -78,8 +78,8 @@ jobs:
         run: sudo apt-get install python3-setuptools python3-tk python3.10-venv
       - name: "Create virtual Environment"
         run: python3 -m venv .venv
-      - name: "Install wheel and conan package"
-        run: source .venv/bin/activate && pip3 install wheel conan
+      - name: "Install requirements_dev.txt"
+        run: source .venv/bin/activate && pip3 install -r requirements_dev.txt
       - name: "Build basilisk"
         run: source .venv/bin/activate && python3 conanfile.py
       - name: "Run Python Tests"
@@ -113,8 +113,8 @@ jobs:
         run: sudo apt-get install python3-setuptools python3-tk python3.11-venv
       - name: "Create virtual Environment"
         run: python3 -m venv .venv
-      - name: "Install wheel and conan package"
-        run: source .venv/bin/activate && pip3 install wheel conan
+      - name: "Install requirements_dev.txt"
+        run: source .venv/bin/activate && pip3 install -r requirements_dev.txt
       - name: "Build basilisk"
         run: source .venv/bin/activate && python3 conanfile.py --opNav True
 
@@ -156,6 +156,7 @@ jobs:
       - name: "Run Python Tests"
         run: |
           source .venv/bin/activate
+          pip install pytest pytest-xdist
           cd src && pytest -n auto -m "not ciSkip"
 
 
@@ -184,11 +185,11 @@ jobs:
       - name: "Create python virtual env"
         shell: pwsh
         run: python -m venv venv
-      - name: "Install wheel and conan package"
+      - name: "Install requirements_dev.txt"
         shell: pwsh
         run: |
             venv\Scripts\activate
-            pip install wheel conan
+            pip install -r requirements_dev.txt
       - name: "Add basilisk and cmake path to env path"
         shell: pwsh
         run: |
@@ -237,10 +238,10 @@ jobs:
 
       - name: "Create virtual Environment"
         run: python3 -m venv .venv
-      - name: "Install wheel and conan package"
+      - name: "Install requirements_dev.txt"
         run: |
           source .venv/bin/activate
-          pip3 install wheel conan cmake
+          pip3 install cmake -r requirements_dev.txt
 
       - name: "Build basilisk with OpNav"
         run: source .venv/bin/activate && python3 conanfile.py --opNav True --allOptPkg
@@ -284,10 +285,10 @@ jobs:
 
       - name: "Create virtual Environment"
         run: python3 -m venv .venv
-      - name: "Install wheel and conan package"
+      - name: "Install requirements_dev.txt"
         run: |
           source .venv/bin/activate
-          pip3 install wheel conan cmake
+          pip3 install cmake -r requirements_dev.txt
 
       - name: "Build basilisk without vizInterface"
         run: source .venv/bin/activate && python3 conanfile.py --vizInterface False

conanfile.py

@@ -6,7 +6,8 @@
 import sys
 from datetime import datetime
 
-import pkg_resources
+import importlib.metadata
+from packaging.requirements import Requirement
 
 from conan import ConanFile
 from conan.tools.cmake import CMakeToolchain, CMake, cmake_layout, CMakeDeps
@@ -121,20 +122,15 @@ def system_requirements(self):
         required = reqFile.read().replace("`", "").split('\n')
         reqFile.close()
         pkgList = [x.lower() for x in required]
-        pkgList += [
-            # Also install build system requirements.
-            # TODO: Read these from the `pyproject.toml` file directly?
-            # NOTE: These are *NOT* runtime requirements and should *NOT* be in `requirements.txt`!
-            "conan>=2.0.5",
-            "setuptools>=70.1.0",
-            "setuptools-scm>=8.0",
-            "packaging>=22",
-            "cmake>=3.26",
-        ]
+
+        reqFile = open('requirements_dev.txt', 'r')
+        required = reqFile.read().replace("`", "").split('\n')
+        reqFile.close()
+        pkgList += [x.lower() for x in required]
 
         checkStr = "Required"
         if self.options.get_safe("allOptPkg"):
-            optFile = open('requirements_optional.txt', 'r')
+            optFile = open('requirements_doc.txt', 'r')
             optionalPkgs = optFile.read().replace("`", "").split('\n')
             optFile.close()
             optionalPkgs = [x.lower() for x in optionalPkgs]
@@ -144,15 +140,25 @@ def system_requirements(self):
         print("\nChecking " + checkStr + " Python packages:")
         missing_packages = []
         for elem in pkgList:
+            if not elem:  # Skip empty or falsy elements
+                continue
+
             try:
-                # TODO: pkg_resources is deprecated, but its replacement
-                # importlib does not provide a way to check for installed
-                # packages given a version specifier (e.g. "numpy<2")...
-                # NOTE: pkg_resources stops working if we upgrade "setuptools",
-                # so check all packages here first, then upgrade below.
-                pkg_resources.require(elem)
-                print("Found: " + statusColor + elem + endColor)
-            except (pkg_resources.DistributionNotFound, pkg_resources.VersionConflict):
+                # Parse the requirement (e.g., "numpy<2")
+                req = Requirement(elem)
+                # Get the installed version of the package
+                installed_version = importlib.metadata.version(req.name)
+
+                # Check if the installed version satisfies the requirement
+                if req.specifier.contains(installed_version):
+                    print("Found: " + statusColor + elem + endColor)
+                else:
+                    raise Exception(
+                        f"Version conflict for {req.name}: {installed_version} does not satisfy {req.specifier}")
+            except importlib.metadata.PackageNotFoundError:
+                missing_packages.append(elem)
+            except Exception as e:
+                print(f"Error: {e}")
                 missing_packages.append(elem)
 
         for elem in missing_packages:

docs/source/Install.rst

@@ -18,7 +18,6 @@ Install
    Install/installOnWindows
    Install/installBuild
    Install/buildExtModules
-   Install/installOptionalPackages
    Install/customPython
    Install/installBuildConan
    Install/pipInstall

docs/source/Install/installBuild.rst

@@ -91,7 +91,7 @@ The script accepts the following options to customize this process.
     * - ``allOptPkg``
       -
       - None
-      - If flag is set the all optional Basilisk python package depenencies are installed
+      - If flag is set the Basilisk python package depenencies to build documentation are installed
     * - ``pathToExternalModules``
       - String
       - Empty
@@ -138,8 +138,7 @@ To run all tests execute the following from the project root directory
 
     python run_all_test.py
 
-To run only the python test use the following commands.  Please see :ref:`installOptionalPackages` on how to
-run an optional multi-processing version of ``pytest``.
+To run only the python test use the following commands.
 
 .. code-block:: console
 

docs/source/Install/installOnLinux.rst

@@ -109,9 +109,9 @@ Dependencies
 
         (venv) $ deactivate
 
-#. Ensure ``wheel`` is installed and install ``conan`` using pip, an example is below::
+#. Ensure all build related pip packages are installed::
 
-       (venv) $ pip3 install wheel conan
+       (venv) $ pip3 install -r requirements_dev.txt
 
    The ``conan`` repositories information is automatically setup by ``conanfile.py``.
 
@@ -124,7 +124,6 @@ Dependencies
    local in your user directory ``.local`` folder, be sure to add
    ``~/.local/bin`` to your ``PATH`` variable.
 
-#. `Optional Packages:` The above directions install the Basilisk base software. There are a series of :ref:`optional packages<installOptionalPackages>` that enhance this capability.
 
 Build Process via Terminal
 --------------------------

docs/source/Install/installOnMacOS.rst

@@ -118,17 +118,14 @@ steps work regardless if done within a virtual environment or not.
 Installing required python support packages
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 #. Basilisk uses ``conan`` for package managing. In order to do so, users
-   must ensure ``wheel`` is installed and install ``conan``::
+   must first install all build related pip packages using::
 
-       (.venv) $ pip3 install wheel conan
+       (.venv) $ pip3 install -r requirements_dev.txt
 
    The ``conan`` repositories information is automatically setup by ``conanfile.py``.
 
 #. The required python packages for Basilisk will be installed automatically when running ``conanfile.py``.
 
-#. `Optional Packages:` The above directions install the Basilisk base software.
-   There are a series of :ref:`optional packages<installOptionalPackages>` that enhance this capability.
-
 Build Project Process via Terminal
 ----------------------------------
 

docs/source/Install/installOnWindows.rst

@@ -124,9 +124,9 @@ Installing required python support packages
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 #. Basilisk uses conan for package managing. In order to do so, users
-   must ensure ``wheel`` is installed and install ``conan``::
+   must first install all build related pip packages using::
 
-       (venv) $ pip install wheel conan
+       (venv) $ pip install -r requirements_dev.txt
 
    The ``conan`` repositories information is automatically setup by ``conanfile.py``.
 
@@ -137,8 +137,6 @@ Installing required python support packages
 
 #. The required python packages for Basilisk will be installed automatically when running ``conanfile.py``.
 
-#. `Optional Packages:` The above directions install the Basilisk base software.
-   There are a series of :ref:`optional packages<installOptionalPackages>` that enhance this capability.
 
 Build Project Process via Command line
 --------------------------------------

docs/source/Support/Developer.rst

@@ -13,6 +13,7 @@ The following support files help with writing Basilisk modules.
    Developer/deprecatingCode
    Developer/makingNewBskModule
    Developer/addSphinxDoc
+   Developer/createHtmlDocumentation
    Developer/bskModuleCheckoutList
    Developer/UnderstandingBasilisk
    Developer/migratingBskModuleToBsk2

docs/source/Support/Developer/CodingGuidlines.rst

@@ -255,3 +255,10 @@ followed by the path to where to generate the report html folder.  It is recomme
 this inside a folder as HTML support folder will be created::
 
     $ pytest --html report/report.html
+
+Formatting Code Files using ``pre-commit`` and ``clang-format``
+---------------------------------------------------------------
+If you are developing new code to contribute back to Basilisk it must follow the
+:ref:`codingGuidelines`.  This requires using the ``pre-commit`` and  ``clang-format``
+packages. The file `CONTRIBUTING.md <https://github.com/AVSLab/basilisk/blob/develop/CONTRIBUTING.md>`__
+explains how to setup and use these code formating tools.

docs/source/Support/Developer/bskModuleCheckoutList.rst

@@ -1,7 +1,7 @@
 
 .. _bskModuleCheckoutList:
 
-Basilisk Module Checkout List 
+Basilisk Module Checkout List
 =============================
 
 This documents contains a series of action items that should be checked
@@ -17,7 +17,7 @@ Building Basilisk and Testing
 -   Do a clean build of Basilisk and make sure all code compiles as expected (see :ref:`FAQ <FAQ>` on how to do a
     clean build)
 -   From the project root directory, run ``python run_all_test.py`` and ensure all python and C/C++ tests are passing
-    as expected (see :ref:`installOptionalPackages` for info on installing and running ``pytest``)
+    as expected
 
 Style and Formatting
 --------------------
@@ -91,4 +91,4 @@ See the :ref:`FAQ <FAQ>` on how to run generate an html validation report using
 
 Update Release Notes
 --------------------
-Update the :ref:`bskReleaseNotes` at ``/docs/source/Support/User/bskReleaseNotes.rst`` to include information about the new features being added.
+Update the :ref:`bskReleaseNotes` at ``/docs/source/Support/User/bskReleaseNotes.rst`` to include information about the new features being added.

docs/source/Support/User/createHtmlDocumentation.rst → docs/source/Support/Developer/createHtmlDocumentation.rst

@@ -7,7 +7,7 @@ Creating the HTML Basilisk Documentation using Sphinx/Doxygen
 Documentation Description
 -------------------------
 The `Sphinx <https://pypi.org/project/Sphinx/>`__ and `Doxygen <http://doxygen.nl>`__ software packages provide an elegant method to both include code explanations, definitions and module documentation, but also to create a full HTML based documentation folder for a software project. An online copy of this HTML documentation is hosted at `AVS Basilisk web site <http://hanspeterschaub.info/bskMain.html>`__ with the `Documentation <http://hanspeterschaub.info/bskHtml/index.html>`__ page.
- 
+
  .. image:: /_images/static/bskHTML.png
  	:align: center
 
@@ -21,15 +21,17 @@ convenient method to install Doxygen by typing in the terminal::
 
    brew install doxygen
 
-See :ref:`installOptionalPackages` to learn what python packages must be installed.
+To install the required python packages run the command::
+
+    pip install -r requirements_doc.txt
 
 Making the HTML Documentation Folder
 ------------------------------------
 First generate the test plots::
 
     cd src
 
-    pytest
+    pytest -n auto
 
 Next, in a terminal window switch to the ``docs`` folder::
 
@@ -48,4 +50,3 @@ To open the HTML index file and view the documentation in the browser use::
 To clean out the sphinx generated documents and folder use::
 
     make clean
-

docs/source/Support/User.rst

@@ -11,9 +11,4 @@ The following support documents are for the Basilisk user who is seeking general
 
    User/FAQ
    User/FAQwindows
-   User/createHtmlDocumentation
    User/migratingToBsk2
-
-
-
-