Format and beautify RNAcentral's nHMMer output
https://github.com/Aciole-David
Backup your inputs before running
Suggestion: Rename each zip to the respective query file name before running
RNAcentral sequence search output is kinda confuse to analyse.
The downloadable output is a randomly named zip file like this:
- f76fcc47-50ff-4a15-9bde-5b2d9781b434.zip
- datapackage.json
- sequences(folder)
- similar-sequences.json
- similar-sequences.txt
- datapackage.json
The similar-sequences.txt file contains the similarity data (subject, E-value, identity, coverage, gaps) along with each alignment.
This script gets one or several ziped RNAcentral nhmmer outputs and extract all metrics in a simples tabular file So users can see the results easier, apply filter, plot, etc.