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Chart margins are now computed at render time rather than with a preset value. Calculation is based on label length and font size to give appropriate padding for labels on both sides of the chart.
Link length is now computed at render time rather than with a preset value. Calculation is based on the chart width (minus the padding) divided by the number of nodes. This can still be overwritten in the options.
Under the hood, the javascript bindings have been restructured such that instance properties are now accessed as a property of the widget, rather than being passed around by functions. This makes tracing data flow quite a bit simpler.