added linting to pre-commit hooks

.devcontainer/setup_env.sh

@@ -6,7 +6,6 @@ python3 -m venv .venv
 echo 'source .venv/bin/activate' >> ~/.bashrc
 pip install --upgrade pip 
 pip install -r requirements.txt
-pre-commit install
 
 # To remove the deprecation warning from jupyter_client when running tests
 touch pytest.ini

.pre-commit-config.yaml

@@ -4,8 +4,25 @@ repos:
     hooks:
       - id: isort
         args: ["--profile", "black", "--filter-files"]
+
   - repo: https://github.com/psf/black-pre-commit-mirror
     rev: 24.4.2
     hooks:
       - id: black
-        language_version: python3.10
+        language_version: python3.10
+
+  - repo: local
+    hooks:
+      - id: pylint
+        name: pylint
+        entry: pylint
+        language: system
+        types: [python]
+        args: [
+            ./src,
+            ./tests, # Directories to lint
+            "-rn", # Only display messages
+            "--rcfile=.pylintrc", # Link to your config file
+            "--disable=R,C,E0401,E0110,I1101,W0718,W9008",
+            "--load-plugins=pylint.extensions.docparams", # Load an extension
+          ]

Makefile

@@ -10,18 +10,17 @@ update_reqs:
 PIP_CACHE_DIR ?= $(HOME)/.cache/pip
 install:
 	pip install --upgrade pip &&\
-		pip install black[jupyter] pytest pylint isort pytest-cov pytest-mock &&\
+		pip install black[jupyter] pytest pylint isort pytest-cov pytest-mock pre-commit &&\
 		pip install --cache-dir $(PIP_CACHE_DIR) -r requirements.txt
 
+pre-commit:
+	pre-commit install --hook-type pre-commit --hook-type pre-merge-commit
+
 isort:
-	isort --profile black ./notebooks
-	isort --profile black ./src
-	isort --profile black ./tests
+	isort --profile black --filter-files ./notebooks ./src ./tests
 
 format:
-	black ./notebooks
-	black ./src
-	black ./tests
+	black ./notebooks ./src ./tests
 
 test:	
 	coverage run -m pytest -vvv

requirements.txt

@@ -12,7 +12,6 @@ optuna_distributed==0.6.1
 pandas==1.5.3
 plotly==5.18.0
 polars==0.20.10
-pre-commit==3.6.2
 pytest==7.4.4
 python-dotenv==1.0.1
 PyYAML==6.0.1